Top 10 genes with highest correlation to Rv1957/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2404c/lepA | (cc=0.6113) | info on Rv2404c/lepA |
| Rv1956/higA | (cc=0.5998) | info on Rv1956/higA |
| Rv1963c/mce3R | (cc=0.5783) | info on Rv1963c/mce3R |
| Rv0190/- | (cc=0.5713) | info on Rv0190/- |
| Rv0119/fadD7 | (cc=0.5617) | info on Rv0119/fadD7 |
| Rv2609c/- | (cc=0.5544) | info on Rv2609c/- |
| Rv1590/- | (cc=0.5519) | info on Rv1590/- |
| Rv2140c/TB18.6 | (cc=0.5472) | info on Rv2140c/TB18.6 |
| Rv3041c/- | (cc=0.5442) | info on Rv3041c/- |
| Rv1568/bioA | (cc=0.539) | info on Rv1568/bioA |
Correlation of Rv1957/- with Rv0190/-
Normalized LFCs for Rv1957/-:
(description and provenance of datasets)
| Rv1957/- | Rv0190/- | |
| Fe_supp_jason_reseq | 1.407 | 3.343 |
| low_pH_jason_reseq | 3.15 | -0.417 |
| NO_jason_reseq | 2.964 | -0.189 |
| B6_jason_reseq | 0.409 | 0.219 |
| MHCII_jason_reseq | -0.92 | -1.92 |
| Isoniazid02 | 2.437 | -2.708 |
| Rifampicin4 | 2.071 | 0.046 |
| Ethambutol3 | 0.969 | -0.479 |
| Meropenem3 | 3.317 | 0.736 |
| Vancomycin16 | 0.287 | -0.923 |
| Rv2680_day32 | -1.63 | -2.322 |
| H37Rv_KO_MarP | 0.986 | -0.701 |
| hypoxia_3wks | -1.691 | -1.95 |
| hypoxia_6wks | -0.474 | -0.349 |
| glycerol | -1.315 | -1.024 |
| cholesterol | -0.606 | -2.25 |
| AJ | -2.336 | -5.593 |
| Bibs02 | -0.856 | -5.141 |
| Bibs02c | -1.087 | -3.794 |
| BL6 | -2.131 | -2.372 |
| BL6a | -1.029 | -3.645 |
| BXD01 | -2.293 | -2.362 |
| BXD010 | -0.784 | -3.899 |
| BXD011 | -0.617 | -2.848 |
| BXD03 | -1.054 | -1.208 |
| BXD04 | -2.107 | -2.458 |
| BXD05 | -1.474 | -2.27 |
| BXD06 | -0.981 | -2.189 |
| BXD07 | -2.359 | -3.551 |
| BXD08 | -2.595 | -3.029 |
| BXD09 | -1.161 | -3.035 |
| CAST | -2.132 | -3.482 |
| CCcont | -0.531 | -0.227 |
| DS01 | -1.312 | -4.041 |
| DS02 | -2.382 | -4.392 |
| DS04 | -1.303 | -1.255 |
| DS0c | -1.205 | -3.414 |
| GP01 | -2.156 | -3.194 |
| GP02 | -1.976 | -2.692 |
| GP0c | -0.587 | -3.568 |
| NOD | -2.603 | -1.616 |
| NZO | -1.696 | -6.0 |
| PWK | -1.921 | -5.972 |
| H37Rv_KO_CtpC | -0.392 | 0.746 |
| H37Rv_KO_CtpD | -1.14 | -1.413 |
| H37Rv_KO_Rv1272 | -1.73 | -3.099 |
| H37Rv_KO_SugABC | -0.997 | -0.487 |
| H37Rv_KO_MbtN | 2.194 | 0.22 |
| Trans05 | -1.28 | -2.773 |
| macrophage_unactivated | -2.004 | 0.098 |
| IL1 | -0.3 | -1.486 |
| Rapamycin | -0.822 | -0.509 |
| Tcell | 1.372 | 2.203 |
| GMCSF | -1.883 | -1.502 |
| IFNab | -2.533 | -1.793 |
| IFNg | -0.716 | -0.54 |
| IFNg_GMCSF1 | -0.751 | -0.987 |
| Rv1432_day32 | -2.78 | -5.743 |
| Rv1565c_day32 | -3.941 | -2.011 |
| secA2_input | 1.324 | -0.775 |
| delta_Rv3594 | 1.947 | -1.811 |
| delta_Rv3717 | 4.691 | -1.032 |
| delta_Rv3811 | 1.893 | -1.524 |
| delta_Rv0954 | 1.749 | -0.092 |
| PonA1 | -0.819 | 0.534 |
| EccD1_KO | -0.069 | -1.638 |
| EspI_KO | -0.12 | -2.493 |
| PE35_KO | 1.059 | -0.537 |
| PPE68_KO | 1.648 | -0.022 |
| glycerol2 | -0.601 | -3.834 |
| lignocerate | -1.88 | -3.114 |
| oleate | -1.948 | -4.388 |
| phosphatidylcholine | -1.852 | -2.787 |
| acetate | -0.291 | -0.864 |
| glucAc | 0.254 | -0.64 |
| Rv0950ko | 0.784 | 0.838 |
| Rv1096ko | -0.247 | -0.685 |
| Rv3684ko | 0.675 | 0.449 |
| delta_otsA_trehalose | 0.514 | -0.116 |