Top 10 genes with highest correlation to Rv1957/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2404c/lepA | (cc=0.6113) | info on Rv2404c/lepA |
| Rv1956/higA | (cc=0.5998) | info on Rv1956/higA |
| Rv1963c/mce3R | (cc=0.5783) | info on Rv1963c/mce3R |
| Rv0190/- | (cc=0.5713) | info on Rv0190/- |
| Rv0119/fadD7 | (cc=0.5617) | info on Rv0119/fadD7 |
| Rv2609c/- | (cc=0.5544) | info on Rv2609c/- |
| Rv1590/- | (cc=0.5519) | info on Rv1590/- |
| Rv2140c/TB18.6 | (cc=0.5472) | info on Rv2140c/TB18.6 |
| Rv3041c/- | (cc=0.5442) | info on Rv3041c/- |
| Rv1568/bioA | (cc=0.539) | info on Rv1568/bioA |
Correlation of Rv1957/- with Rv1590/-
Normalized LFCs for Rv1957/-:
(description and provenance of datasets)
| Rv1957/- | Rv1590/- | |
| Fe_supp_jason_reseq | 1.407 | 1.809 |
| low_pH_jason_reseq | 3.15 | -2.058 |
| NO_jason_reseq | 2.964 | -0.391 |
| B6_jason_reseq | 0.409 | -5.114 |
| MHCII_jason_reseq | -0.92 | -4.029 |
| Isoniazid02 | 2.437 | -0.288 |
| Rifampicin4 | 2.071 | -0.273 |
| Ethambutol3 | 0.969 | 0.114 |
| Meropenem3 | 3.317 | 0.156 |
| Vancomycin16 | 0.287 | 0.462 |
| Rv2680_day32 | -1.63 | -4.076 |
| H37Rv_KO_MarP | 0.986 | -0.391 |
| hypoxia_3wks | -1.691 | 0.598 |
| hypoxia_6wks | -0.474 | -0.18 |
| glycerol | -1.315 | -6.0 |
| cholesterol | -0.606 | -4.706 |
| AJ | -2.336 | -6.0 |
| Bibs02 | -0.856 | -5.941 |
| Bibs02c | -1.087 | -6.0 |
| BL6 | -2.131 | -3.094 |
| BL6a | -1.029 | -5.463 |
| BXD01 | -2.293 | -3.774 |
| BXD010 | -0.784 | -4.161 |
| BXD011 | -0.617 | -3.691 |
| BXD03 | -1.054 | -4.393 |
| BXD04 | -2.107 | -4.018 |
| BXD05 | -1.474 | -3.329 |
| BXD06 | -0.981 | -4.337 |
| BXD07 | -2.359 | -4.499 |
| BXD08 | -2.595 | -4.321 |
| BXD09 | -1.161 | -4.566 |
| CAST | -2.132 | -5.586 |
| CCcont | -0.531 | 0.202 |
| DS01 | -1.312 | -6.0 |
| DS02 | -2.382 | -6.0 |
| DS04 | -1.303 | -3.596 |
| DS0c | -1.205 | -6.0 |
| GP01 | -2.156 | -2.937 |
| GP02 | -1.976 | -2.475 |
| GP0c | -0.587 | -1.317 |
| NOD | -2.603 | -4.357 |
| NZO | -1.696 | -6.0 |
| PWK | -1.921 | -5.836 |
| H37Rv_KO_CtpC | -0.392 | -4.101 |
| H37Rv_KO_CtpD | -1.14 | -1.658 |
| H37Rv_KO_Rv1272 | -1.73 | -4.196 |
| H37Rv_KO_SugABC | -0.997 | -1.708 |
| H37Rv_KO_MbtN | 2.194 | 0.152 |
| Trans05 | -1.28 | -3.603 |
| macrophage_unactivated | -2.004 | 0.145 |
| IL1 | -0.3 | -0.442 |
| Rapamycin | -0.822 | 2.243 |
| Tcell | 1.372 | 0.241 |
| GMCSF | -1.883 | 0.723 |
| IFNab | -2.533 | 1.36 |
| IFNg | -0.716 | -0.657 |
| IFNg_GMCSF1 | -0.751 | -2.209 |
| Rv1432_day32 | -2.78 | -6.0 |
| Rv1565c_day32 | -3.941 | -6.0 |
| secA2_input | 1.324 | -0.088 |
| delta_Rv3594 | 1.947 | 1.781 |
| delta_Rv3717 | 4.691 | 1.747 |
| delta_Rv3811 | 1.893 | 0.921 |
| delta_Rv0954 | 1.749 | 0.376 |
| PonA1 | -0.819 | 1.032 |
| EccD1_KO | -0.069 | -1.312 |
| EspI_KO | -0.12 | -0.556 |
| PE35_KO | 1.059 | -0.621 |
| PPE68_KO | 1.648 | -1.145 |
| glycerol2 | -0.601 | 0.0 |
| lignocerate | -1.88 | 0.168 |
| oleate | -1.948 | 0.0 |
| phosphatidylcholine | -1.852 | 0.0 |
| acetate | -0.291 | 0.0 |
| glucAc | 0.254 | 1.034 |
| Rv0950ko | 0.784 | -0.651 |
| Rv1096ko | -0.247 | 1.113 |
| Rv3684ko | 0.675 | -0.17 |
| delta_otsA_trehalose | 0.514 | 1.762 |