TnSeqCorr

Top 10 genes with highest correlation to Rv1927/-:

update plotcorrelationlink to info on gene
Rv0264c/- (cc=0.5501) info on Rv0264c/-
Rv0278c/PE_PGRS3 (cc=0.5241) info on Rv0278c/PE_PGRS3
Rv2577/- (cc=0.5225) info on Rv2577/-
Rv2638/- (cc=0.5099) info on Rv2638/-
Rv1425/- (cc=0.5068) info on Rv1425/-
Rv0964c/- (cc=0.5021) info on Rv0964c/-
Rv0536/galE3 (cc=0.4996) info on Rv0536/galE3
Rv1999c/- (cc=0.496) info on Rv1999c/-
Rv2687c/- (cc=0.4907) info on Rv2687c/-
Rv0870c/- (cc=0.4903) info on Rv0870c/-

Correlation of Rv1927/- with Rv1425/-

Normalized LFCs for Rv1927/-:
(description and provenance of datasets)
Rv1927/-Rv1425/-
Fe_supp_jason_reseq

0.009

0.054

low_pH_jason_reseq

-0.458

-0.119

NO_jason_reseq

0.097

-0.168

B6_jason_reseq

0.397

0.634

MHCII_jason_reseq

0.468

0.73

Isoniazid02

-0.154

1.234

Rifampicin4

0.311

-0.087

Ethambutol3

0.044

0.061

Meropenem3

0.119

0.817

Vancomycin16

1.053

0.085

Rv2680_day32

0.472

0.043

H37Rv_KO_MarP

-0.161

0.236

hypoxia_3wks

-0.179

-0.263

hypoxia_6wks

-0.599

-0.56

glycerol

0.009

-0.591

cholesterol

-0.09

0.012

AJ

0.429

0.123

Bibs02

0.878

-0.11

Bibs02c

0.194

-0.27

BL6

-0.219

-0.246

BL6a

-0.319

-0.775

BXD01

-0.359

0.297

BXD010

0.114

-0.432

BXD011

0.141

-0.176

BXD03

-0.554

-0.488

BXD04

-0.408

0.021

BXD05

-0.504

-0.328

BXD06

-0.039

0.039

BXD07

-0.661

-0.152

BXD08

-0.826

0.163

BXD09

-0.294

-0.395

CAST

0.073

-0.489

CCcont

-0.226

-0.25

DS01

0.38

0.05

DS02

0.38

0.46

DS04

0.024

0.416

DS0c

0.185

0.09

GP01

-0.226

-0.038

GP02

1.457

1.025

GP0c

-0.197

-0.199

NOD

-0.218

0.163

NZO

0.561

0.295

PWK

0.774

0.276

H37Rv_KO_CtpC

-0.38

-0.328

H37Rv_KO_CtpD

-0.342

0.169

H37Rv_KO_Rv1272

0.371

0.747

H37Rv_KO_SugABC

-0.512

-0.2

H37Rv_KO_MbtN

-0.993

-0.224

Trans05

0.318

0.532

macrophage_unactivated

-0.297

-0.107

IL1

0.282

-0.05

Rapamycin

-0.025

0.276

Tcell

0.049

-0.14

GMCSF

-0.38

0.045

IFNab

0.136

-0.348

IFNg

0.275

-0.233

IFNg_GMCSF1

-0.321

-0.135

Rv1432_day32

1.199

0.0

Rv1565c_day32

0.046

0.377

secA2_input

-0.466

-0.027

delta_Rv3594

-0.624

-0.119

delta_Rv3717

0.345

-0.395

delta_Rv3811

0.283

-0.412

delta_Rv0954

-0.397

0.58

PonA1

-0.278

-0.488

EccD1_KO

0.0

-0.526

EspI_KO

-0.539

-0.753

PE35_KO

0.429

-0.312

PPE68_KO

0.035

-1.008

glycerol2

1.146

0.996

lignocerate

0.95

1.223

oleate

0.509

0.896

phosphatidylcholine

1.305

1.389

acetate

0.387

0.68

glucAc

1.034

0.474

Rv0950ko

0.109

-0.277

Rv1096ko

0.109

-0.229

Rv3684ko

-0.102

-0.098

delta_otsA_trehalose

-0.202

-0.628