TnSeqCorr

Top 10 genes with highest correlation to Rv1906c/-:

update plotcorrelationlink to info on gene
Rv0499/- (cc=0.4999) info on Rv0499/-
Rv0450c/mmpL4 (cc=0.4369) info on Rv0450c/mmpL4
Rv3650/PE33 (cc=0.418) info on Rv3650/PE33
Rv2067c/- (cc=0.4039) info on Rv2067c/-
Rv2851c/- (cc=0.3911) info on Rv2851c/-
Rv0451c/mmpS4 (cc=0.3736) info on Rv0451c/mmpS4
Rv3501c/yrbE4A (cc=0.3712) info on Rv3501c/yrbE4A
Rv2836c/dinF (cc=0.3626) info on Rv2836c/dinF
Rv2686c/- (cc=0.3542) info on Rv2686c/-
Rv3526/kshA (cc=0.3518) info on Rv3526/kshA

Correlation of Rv1906c/- with Rv3650/PE33

Normalized LFCs for Rv1906c/-:
(description and provenance of datasets)
Rv1906c/-Rv3650/PE33
Fe_supp_jason_reseq

-0.466

3.01

low_pH_jason_reseq

-0.734

2.212

NO_jason_reseq

-0.499

-1.78

B6_jason_reseq

-1.742

-0.214

MHCII_jason_reseq

-0.967

-0.663

Isoniazid02

0.004

1.394

Rifampicin4

0.444

0.812

Ethambutol3

-1.502

-0.14

Meropenem3

0.329

0.386

Vancomycin16

-1.0

0.971

Rv2680_day32

-1.235

0.803

H37Rv_KO_MarP

-0.713

0.147

hypoxia_3wks

-0.754

1.029

hypoxia_6wks

-0.491

1.777

glycerol

-0.222

-0.554

cholesterol

-2.549

-0.398

AJ

-1.277

-0.637

Bibs02

0.57

1.249

Bibs02c

-0.265

-0.174

BL6

-1.167

1.909

BL6a

-0.263

2.986

BXD01

-1.348

3.607

BXD010

-0.514

1.662

BXD011

-0.649

2.278

BXD03

-0.485

1.623

BXD04

-0.044

4.115

BXD05

0.354

3.431

BXD06

-0.379

2.714

BXD07

-1.195

3.558

BXD08

-0.837

3.925

BXD09

-1.032

3.04

CAST

-0.843

0.501

CCcont

0.909

2.967

DS01

-0.797

0.0

DS02

-0.618

1.976

DS04

-1.504

-0.533

DS0c

-0.547

-0.379

GP01

0.103

0.444

GP02

-0.766

2.625

GP0c

0.559

0.888

NOD

-0.885

-0.617

NZO

-1.049

-0.548

PWK

-0.205

-0.539

H37Rv_KO_CtpC

-0.39

2.905

H37Rv_KO_CtpD

-2.039

1.193

H37Rv_KO_Rv1272

-0.338

-0.117

H37Rv_KO_SugABC

-1.445

-0.272

H37Rv_KO_MbtN

1.124

5.572

Trans05

-0.329

3.09

macrophage_unactivated

-0.625

0.77

IL1

0.16

0.955

Rapamycin

0.546

4.195

Tcell

-0.336

1.147

GMCSF

-1.217

-0.9

IFNab

-0.738

1.451

IFNg

-0.275

4.918

IFNg_GMCSF1

0.094

0.346

Rv1432_day32

-2.468

-2.639

Rv1565c_day32

-1.638

-1.651

secA2_input

-1.628

-1.722

delta_Rv3594

-1.121

4.006

delta_Rv3717

-0.905

2.037

delta_Rv3811

-0.48

2.687

delta_Rv0954

-0.404

1.862

PonA1

-0.526

-0.56

EccD1_KO

-0.885

-2.983

EspI_KO

0.094

-0.773

PE35_KO

-1.138

-3.661

PPE68_KO

-1.558

-2.902

glycerol2

0.415

2.036

lignocerate

0.368

1.867

oleate

-3.413

-1.117

phosphatidylcholine

0.819

0.854

acetate

-0.175

2.986

glucAc

-0.624

2.521

Rv0950ko

-0.214

-2.844

Rv1096ko

-1.704

-0.492

Rv3684ko

-1.998

-0.462

delta_otsA_trehalose

0.264

0.75