TnSeqCorr

Top 10 genes with highest correlation to Rv1885c/-:

update plotcorrelationlink to info on gene
Rv1548c/PPE21 (cc=0.5453) info on Rv1548c/PPE21
Rv2038c/- (cc=0.4839) info on Rv2038c/-
Rv3125c/PPE49 (cc=0.4827) info on Rv3125c/PPE49
Rv2957/- (cc=0.4605) info on Rv2957/-
Rv1503c/- (cc=0.4584) info on Rv1503c/-
Rv1387/PPE20 (cc=0.4569) info on Rv1387/PPE20
Rv1917c/PPE34 (cc=0.4569) info on Rv1917c/PPE34
Rv2809/- (cc=0.4557) info on Rv2809/-
Rv1831/- (cc=0.4544) info on Rv1831/-
Rv0844c/narL (cc=0.453) info on Rv0844c/narL

Correlation of Rv1885c/- with Rv2809/-

Normalized LFCs for Rv1885c/-:
(description and provenance of datasets)
Rv1885c/-Rv2809/-
Fe_supp_jason_reseq

-0.204

0.592

low_pH_jason_reseq

-0.37

-0.236

NO_jason_reseq

-0.221

0.62

B6_jason_reseq

-0.127

0.436

MHCII_jason_reseq

0.283

1.042

Isoniazid02

-0.115

-0.825

Rifampicin4

-0.574

0.246

Ethambutol3

0.129

1.547

Meropenem3

0.028

-0.146

Vancomycin16

-0.732

-0.032

Rv2680_day32

-0.112

-2.243

H37Rv_KO_MarP

0.109

-0.476

hypoxia_3wks

0.08

-0.271

hypoxia_6wks

-0.263

0.098

glycerol

-0.252

-2.478

cholesterol

-0.495

-0.07

AJ

0.148

0.087

Bibs02

-0.044

-0.126

Bibs02c

-0.341

-1.253

BL6

0.592

1.036

BL6a

-0.125

-0.019

BXD01

-0.012

1.196

BXD010

-0.281

1.083

BXD011

0.275

0.899

BXD03

0.223

0.735

BXD04

0.864

1.117

BXD05

0.115

1.149

BXD06

0.0

0.414

BXD07

0.346

0.936

BXD08

0.079

1.493

BXD09

0.09

0.747

CAST

0.01

-0.022

CCcont

0.3

1.331

DS01

-0.546

-0.186

DS02

-0.503

0.414

DS04

-0.994

-0.946

DS0c

-0.104

-0.585

GP01

-0.087

0.667

GP02

0.512

1.361

GP0c

0.172

0.599

NOD

0.308

0.895

NZO

0.24

0.618

PWK

0.054

-0.301

H37Rv_KO_CtpC

0.418

1.032

H37Rv_KO_CtpD

0.298

-1.764

H37Rv_KO_Rv1272

0.94

1.858

H37Rv_KO_SugABC

0.908

-0.048

H37Rv_KO_MbtN

0.927

0.196

Trans05

1.173

1.384

macrophage_unactivated

-0.019

0.552

IL1

-0.839

-1.48

Rapamycin

-0.298

-0.509

Tcell

-0.098

0.57

GMCSF

0.121

-0.71

IFNab

0.157

-1.345

IFNg

-0.08

0.0

IFNg_GMCSF1

0.317

0.355

Rv1432_day32

0.297

-0.729

Rv1565c_day32

-0.608

-0.667

secA2_input

-0.282

-0.883

delta_Rv3594

0.219

0.125

delta_Rv3717

-0.128

0.045

delta_Rv3811

0.355

0.439

delta_Rv0954

-0.083

-0.562

PonA1

-0.751

-2.086

EccD1_KO

0.474

0.414

EspI_KO

-0.622

0.964

PE35_KO

0.175

1.219

PPE68_KO

-0.09

1.494

glycerol2

0.233

0.247

lignocerate

0.304

0.933

oleate

-0.238

-0.072

phosphatidylcholine

-0.05

0.569

acetate

0.141

0.702

glucAc

0.311

0.594

Rv0950ko

0.19

-0.914

Rv1096ko

-0.033

-2.015

Rv3684ko

-0.684

-1.385

delta_otsA_trehalose

-0.217

0.0