TnSeqCorr

Top 10 genes with highest correlation to Rv1679/fadE16:

update plotcorrelationlink to info on gene
Rv2758c/vapB21 (cc=0.5093) info on Rv2758c/vapB21
Rv2060/- (cc=0.4901) info on Rv2060/-
Rv0945/- (cc=0.439) info on Rv0945/-
Rv2813/- (cc=0.4334) info on Rv2813/-
Rv0312/- (cc=0.4329) info on Rv0312/-
Rv2151c/ftsQ (cc=0.4325) info on Rv2151c/ftsQ
Rv2609c/- (cc=0.4305) info on Rv2609c/-
Rv2970A/- (cc=0.4277) info on Rv2970A/-
Rv2481c/- (cc=0.4156) info on Rv2481c/-
Rv1499/- (cc=0.4152) info on Rv1499/-

Correlation of Rv1679/fadE16 with Rv2609c/-

Normalized LFCs for Rv1679/fadE16:
(description and provenance of datasets)
Rv1679/fadE16Rv2609c/-
Fe_supp_jason_reseq

0.834

-0.786

low_pH_jason_reseq

0.214

-1.128

NO_jason_reseq

-1.118

0.428

B6_jason_reseq

-0.198

-1.798

MHCII_jason_reseq

-1.309

-2.104

Isoniazid02

0.131

0.966

Rifampicin4

-0.688

-0.847

Ethambutol3

-0.524

4.244

Meropenem3

-0.304

-1.412

Vancomycin16

0.239

-0.101

Rv2680_day32

-1.54

-3.538

H37Rv_KO_MarP

-0.528

0.26

hypoxia_3wks

-0.933

-3.561

hypoxia_6wks

0.217

-1.428

glycerol

0.78

-0.07

cholesterol

-0.308

-3.14

AJ

-1.812

-3.35

Bibs02

-1.537

-0.991

Bibs02c

-1.297

-2.302

BL6

-0.034

-1.229

BL6a

-0.23

-2.477

BXD01

0.926

-1.649

BXD010

1.109

-1.622

BXD011

0.391

-1.116

BXD03

-0.076

-2.179

BXD04

-1.039

-1.762

BXD05

0.14

-2.109

BXD06

0.566

-1.98

BXD07

1.248

-1.896

BXD08

-1.039

-1.774

BXD09

0.075

-2.434

CAST

-0.34

-2.993

CCcont

1.019

-0.859

DS01

-1.348

-1.865

DS02

-0.391

-1.482

DS04

-2.025

-1.552

DS0c

-0.949

-1.876

GP01

-1.106

-1.844

GP02

-0.752

-2.375

GP0c

-1.357

-1.711

NOD

-0.89

-1.429

NZO

-1.046

-3.125

PWK

-1.532

-3.5

H37Rv_KO_CtpC

-2.104

-2.476

H37Rv_KO_CtpD

-1.419

-0.806

H37Rv_KO_Rv1272

0.282

-0.975

H37Rv_KO_SugABC

-1.382

-1.254

H37Rv_KO_MbtN

-1.155

-0.762

Trans05

1.838

-0.928

macrophage_unactivated

0.682

-0.057

IL1

0.136

0.789

Rapamycin

0.141

0.479

Tcell

2.522

1.153

GMCSF

-0.388

-0.628

IFNab

-0.768

-0.919

IFNg

0.355

-1.125

IFNg_GMCSF1

1.156

0.383

Rv1432_day32

0.0

-2.203

Rv1565c_day32

0.0

-1.346

secA2_input

1.166

0.83

delta_Rv3594

0.312

2.356

delta_Rv3717

0.115

1.549

delta_Rv3811

0.57

1.706

delta_Rv0954

-1.649

0.129

PonA1

-0.712

0.067

EccD1_KO

-0.546

-1.885

EspI_KO

-1.01

-1.338

PE35_KO

-0.283

-0.648

PPE68_KO

-0.646

-1.139

glycerol2

0.963

-0.884

lignocerate

1.685

-0.58

oleate

-1.469

-3.424

phosphatidylcholine

1.3

-0.368

acetate

1.383

0.904

glucAc

1.675

0.743

Rv0950ko

1.375

0.567

Rv1096ko

-0.528

-0.697

Rv3684ko

-0.573

0.458

delta_otsA_trehalose

-0.103

-0.783