TnSeqCorr

Top 10 genes with highest correlation to Rv1471/trxB1:

update plotcorrelationlink to info on gene
Rv2544/lppB (cc=0.6987) info on Rv2544/lppB
Rv0495c/- (cc=0.6096) info on Rv0495c/-
Rv1987/- (cc=0.5731) info on Rv1987/-
Rv2078/- (cc=0.569) info on Rv2078/-
Rv0590A/- (cc=0.5689) info on Rv0590A/-
Rv0109/PE_PGRS1 (cc=0.5578) info on Rv0109/PE_PGRS1
Rv2281/pitB (cc=0.5545) info on Rv2281/pitB
Rv0055/rpsR1 (cc=0.5436) info on Rv0055/rpsR1
Rv1604/impA (cc=0.5435) info on Rv1604/impA
Rv3287c/rsbW (cc=0.5432) info on Rv3287c/rsbW

Correlation of Rv1471/trxB1 with Rv2281/pitB

Normalized LFCs for Rv1471/trxB1:
(description and provenance of datasets)
Rv1471/trxB1Rv2281/pitB
Fe_supp_jason_reseq

-1.092

0.223

low_pH_jason_reseq

-0.035

-0.343

NO_jason_reseq

-0.242

0.215

B6_jason_reseq

-1.221

0.28

MHCII_jason_reseq

-2.743

-0.784

Isoniazid02

0.432

-1.67

Rifampicin4

-1.313

0.458

Ethambutol3

0.133

0.555

Meropenem3

-0.465

-0.641

Vancomycin16

0.34

-0.584

Rv2680_day32

0.343

0.336

H37Rv_KO_MarP

-0.665

-0.325

hypoxia_3wks

-1.188

-0.191

hypoxia_6wks

1.232

-0.1

glycerol

2.319

0.171

cholesterol

0.532

0.215

AJ

1.743

0.482

Bibs02

-0.158

0.155

Bibs02c

-0.446

0.0

BL6

3.592

0.69

BL6a

2.91

0.469

BXD01

0.812

0.193

BXD010

2.067

0.456

BXD011

2.63

0.591

BXD03

2.354

-0.234

BXD04

2.435

-0.139

BXD05

3.599

0.28

BXD06

2.481

0.541

BXD07

2.685

0.643

BXD08

2.983

0.952

BXD09

2.301

1.115

CAST

1.605

0.27

CCcont

2.453

0.588

DS01

1.324

0.69

DS02

0.961

0.605

DS04

-0.932

-0.419

DS0c

-0.613

-0.614

GP01

-1.378

0.147

GP02

-1.161

1.022

GP0c

-1.684

-0.429

NOD

-0.26

0.298

NZO

1.604

0.834

PWK

2.083

0.068

H37Rv_KO_CtpC

3.258

0.165

H37Rv_KO_CtpD

1.628

0.499

H37Rv_KO_Rv1272

3.897

0.097

H37Rv_KO_SugABC

1.335

0.673

H37Rv_KO_MbtN

-0.408

-0.316

Trans05

1.81

0.515

macrophage_unactivated

-0.211

0.622

IL1

1.124

0.35

Rapamycin

0.328

0.052

Tcell

0.961

-0.482

GMCSF

-1.188

-0.29

IFNab

0.432

0.051

IFNg

1.457

0.567

IFNg_GMCSF1

0.0

-0.465

Rv1432_day32

0.0

0.231

Rv1565c_day32

1.087

-0.106

secA2_input

-0.266

0.277

delta_Rv3594

0.089

0.34

delta_Rv3717

2.29

-0.468

delta_Rv3811

2.127

-1.184

delta_Rv0954

1.957

-0.028

PonA1

-0.608

0.299

EccD1_KO

-0.062

-0.164

EspI_KO

0.305

-0.682

PE35_KO

1.003

0.14

PPE68_KO

1.328

0.304

glycerol2

3.213

1.481

lignocerate

3.899

2.191

oleate

0.688

-0.084

phosphatidylcholine

3.039

1.867

acetate

5.878

2.364

glucAc

4.496

2.339

Rv0950ko

1.481

0.066

Rv1096ko

0.552

0.383

Rv3684ko

-0.354

-0.789

delta_otsA_trehalose

-0.27

-2.033