Top 10 genes with highest correlation to Rv1287/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2467/pepN | (cc=0.7005) | info on Rv2467/pepN |
| Rv0561c/- | (cc=0.6926) | info on Rv0561c/- |
| Rv1323/fadA4 | (cc=0.6389) | info on Rv1323/fadA4 |
| Rv2563/- | (cc=0.634) | info on Rv2563/- |
| Rv0910/- | (cc=0.6298) | info on Rv0910/- |
| Rv0406c/- | (cc=0.628) | info on Rv0406c/- |
| Rv0634A/- | (cc=0.6274) | info on Rv0634A/- |
| Rv2258c/- | (cc=0.6125) | info on Rv2258c/- |
| Rv3041c/- | (cc=0.6091) | info on Rv3041c/- |
| Rv1473/- | (cc=0.6039) | info on Rv1473/- |
Correlation of Rv1287/- with Rv2563/-
Normalized LFCs for Rv1287/-:
(description and provenance of datasets)
| Rv1287/- | Rv2563/- | |
| Fe_supp_jason_reseq | 2.9 | 1.514 |
| low_pH_jason_reseq | 0.323 | 0.0 |
| NO_jason_reseq | -0.583 | -4.161 |
| B6_jason_reseq | 0.571 | -2.7 |
| MHCII_jason_reseq | 0.098 | -2.378 |
| Isoniazid02 | 0.805 | 0.677 |
| Rifampicin4 | -0.374 | -1.868 |
| Ethambutol3 | 0.822 | 2.152 |
| Meropenem3 | 0.633 | -1.269 |
| Vancomycin16 | -0.31 | -0.488 |
| Rv2680_day32 | -2.282 | -1.894 |
| H37Rv_KO_MarP | 0.24 | 0.364 |
| hypoxia_3wks | -2.999 | -2.939 |
| hypoxia_6wks | -2.714 | -3.627 |
| glycerol | -0.66 | 1.156 |
| cholesterol | 2.591 | 0.46 |
| AJ | -1.44 | -4.323 |
| Bibs02 | -0.309 | -0.13 |
| Bibs02c | -0.64 | -0.149 |
| BL6 | -2.144 | -2.974 |
| BL6a | -2.04 | -1.34 |
| BXD01 | -2.037 | -3.227 |
| BXD010 | -1.759 | -3.045 |
| BXD011 | -2.084 | -2.167 |
| BXD03 | -1.284 | -2.443 |
| BXD04 | -1.934 | -2.94 |
| BXD05 | -1.929 | -3.2 |
| BXD06 | -1.914 | -3.307 |
| BXD07 | -1.315 | -3.167 |
| BXD08 | -1.827 | -3.162 |
| BXD09 | -2.409 | -3.341 |
| CAST | -1.779 | -2.194 |
| CCcont | -0.729 | -0.754 |
| DS01 | -0.772 | 1.932 |
| DS02 | -0.758 | 1.281 |
| DS04 | -0.593 | 1.206 |
| DS0c | -0.069 | 1.634 |
| GP01 | -1.865 | -2.446 |
| GP02 | -1.654 | -2.061 |
| GP0c | -2.455 | -3.221 |
| NOD | -1.886 | -0.898 |
| NZO | -2.419 | -3.835 |
| PWK | -1.391 | 0.665 |
| H37Rv_KO_CtpC | 0.872 | -1.997 |
| H37Rv_KO_CtpD | -0.683 | -1.089 |
| H37Rv_KO_Rv1272 | -1.513 | -1.451 |
| H37Rv_KO_SugABC | -1.251 | -1.736 |
| H37Rv_KO_MbtN | -1.062 | -2.191 |
| Trans05 | -1.721 | -2.988 |
| macrophage_unactivated | -0.12 | 1.411 |
| IL1 | -1.967 | -1.64 |
| Rapamycin | -0.761 | -0.651 |
| Tcell | 0.358 | -1.212 |
| GMCSF | -0.776 | -1.212 |
| IFNab | 0.435 | 0.729 |
| IFNg | -1.179 | -2.028 |
| IFNg_GMCSF1 | -1.225 | -0.434 |
| Rv1432_day32 | -0.787 | -0.884 |
| Rv1565c_day32 | 3.074 | 2.504 |
| secA2_input | 0.023 | 0.127 |
| delta_Rv3594 | 2.232 | -2.496 |
| delta_Rv3717 | 0.81 | -2.054 |
| delta_Rv3811 | 0.779 | -2.427 |
| delta_Rv0954 | 4.017 | 2.344 |
| PonA1 | 1.101 | 2.92 |
| EccD1_KO | 1.151 | -0.743 |
| EspI_KO | 2.321 | 1.395 |
| PE35_KO | 1.473 | 2.013 |
| PPE68_KO | 2.342 | 1.67 |
| glycerol2 | -0.43 | -3.095 |
| lignocerate | 0.675 | -1.315 |
| oleate | -0.603 | -3.265 |
| phosphatidylcholine | -0.043 | -1.693 |
| acetate | 0.025 | -0.893 |
| glucAc | 0.122 | -0.881 |
| Rv0950ko | -0.045 | 0.841 |
| Rv1096ko | 0.353 | 1.013 |
| Rv3684ko | 1.484 | -0.079 |
| delta_otsA_trehalose | 1.312 | -1.192 |