Top 10 genes with highest correlation to Rv1130/prpD:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1129c/- | (cc=0.7283) | info on Rv1129c/- |
| Rv3553/- | (cc=0.6381) | info on Rv3553/- |
| Rv3615c/espC | (cc=0.6) | info on Rv3615c/espC |
| Rv1131/prpC | (cc=0.5866) | info on Rv1131/prpC |
| Rv3551/- | (cc=0.5822) | info on Rv3551/- |
| Rv3545c/cyp125 | (cc=0.5798) | info on Rv3545c/cyp125 |
| Rv0172/mce1D | (cc=0.5729) | info on Rv0172/mce1D |
| Rv3552/- | (cc=0.5701) | info on Rv3552/- |
| Rv3540c/ltp2 | (cc=0.5684) | info on Rv3540c/ltp2 |
| Rv3614c/espD | (cc=0.5675) | info on Rv3614c/espD |
Correlation of Rv1130/prpD with Rv3553/-
Normalized LFCs for Rv1130/prpD:
(description and provenance of datasets)
| Rv1130/prpD | Rv3553/- | |
| Fe_supp_jason_reseq | -0.554 | -0.346 |
| low_pH_jason_reseq | -2.367 | -0.798 |
| NO_jason_reseq | 0.042 | -1.685 |
| B6_jason_reseq | -2.148 | -2.718 |
| MHCII_jason_reseq | -1.471 | -2.764 |
| Isoniazid02 | 0.147 | 0.141 |
| Rifampicin4 | -0.219 | 0.054 |
| Ethambutol3 | 0.181 | -0.113 |
| Meropenem3 | 0.732 | 1.961 |
| Vancomycin16 | 0.138 | 0.08 |
| Rv2680_day32 | -1.446 | -0.074 |
| H37Rv_KO_MarP | -0.302 | 0.487 |
| hypoxia_3wks | -0.686 | -0.845 |
| hypoxia_6wks | 0.259 | 0.311 |
| glycerol | -0.671 | -0.36 |
| cholesterol | -3.292 | -3.515 |
| AJ | -1.852 | -2.393 |
| Bibs02 | -3.513 | -4.437 |
| Bibs02c | -3.471 | -3.674 |
| BL6 | 0.876 | -1.398 |
| BL6a | -1.171 | -2.752 |
| BXD01 | 0.075 | -1.241 |
| BXD010 | 0.237 | -1.394 |
| BXD011 | 0.272 | -0.52 |
| BXD03 | -0.17 | 0.554 |
| BXD04 | -0.06 | -1.209 |
| BXD05 | -0.207 | -0.145 |
| BXD06 | 0.106 | -1.453 |
| BXD07 | 0.2 | -0.464 |
| BXD08 | 0.646 | -0.937 |
| BXD09 | -0.051 | -1.953 |
| CAST | -1.562 | -3.482 |
| CCcont | 0.873 | 0.355 |
| DS01 | -3.537 | -3.472 |
| DS02 | -3.608 | -4.682 |
| DS04 | -1.452 | -3.407 |
| DS0c | -2.596 | -5.264 |
| GP01 | -1.529 | -0.565 |
| GP02 | -0.583 | -1.861 |
| GP0c | -0.096 | 0.139 |
| NOD | -0.054 | -2.511 |
| NZO | -1.982 | 0.1 |
| PWK | -2.011 | -1.77 |
| H37Rv_KO_CtpC | -0.798 | -3.144 |
| H37Rv_KO_CtpD | -0.381 | -1.494 |
| H37Rv_KO_Rv1272 | 0.62 | -0.089 |
| H37Rv_KO_SugABC | -0.024 | -0.01 |
| H37Rv_KO_MbtN | -0.413 | -0.159 |
| Trans05 | 0.241 | 0.536 |
| macrophage_unactivated | -0.997 | 0.0 |
| IL1 | -3.625 | 0.317 |
| Rapamycin | -3.228 | 0.485 |
| Tcell | -2.209 | -2.225 |
| GMCSF | 0.739 | 0.694 |
| IFNab | 1.608 | 1.246 |
| IFNg | -0.139 | 0.203 |
| IFNg_GMCSF1 | 1.012 | 0.17 |
| Rv1432_day32 | -0.19 | -0.926 |
| Rv1565c_day32 | -0.261 | -1.589 |
| secA2_input | -1.005 | -0.471 |
| delta_Rv3594 | 0.347 | 0.318 |
| delta_Rv3717 | 0.428 | 0.539 |
| delta_Rv3811 | 0.47 | 1.096 |
| delta_Rv0954 | 0.884 | 0.451 |
| PonA1 | 0.152 | -0.04 |
| EccD1_KO | 1.145 | 0.214 |
| EspI_KO | 0.359 | -0.57 |
| PE35_KO | 0.971 | 0.0 |
| PPE68_KO | 0.921 | -0.262 |
| glycerol2 | -0.363 | -0.238 |
| lignocerate | -0.514 | 0.817 |
| oleate | -1.27 | -2.912 |
| phosphatidylcholine | -0.717 | -0.038 |
| acetate | 1.232 | 0.517 |
| glucAc | 1.099 | 0.827 |
| Rv0950ko | 0.476 | 0.525 |
| Rv1096ko | 0.265 | 1.629 |
| Rv3684ko | -0.203 | 2.024 |
| delta_otsA_trehalose | 0.846 | -0.603 |