Top 10 genes with highest correlation to Rv1130/prpD:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1129c/- | (cc=0.7283) | info on Rv1129c/- |
| Rv3553/- | (cc=0.6381) | info on Rv3553/- |
| Rv3615c/espC | (cc=0.6) | info on Rv3615c/espC |
| Rv1131/prpC | (cc=0.5866) | info on Rv1131/prpC |
| Rv3551/- | (cc=0.5822) | info on Rv3551/- |
| Rv3545c/cyp125 | (cc=0.5798) | info on Rv3545c/cyp125 |
| Rv0172/mce1D | (cc=0.5729) | info on Rv0172/mce1D |
| Rv3552/- | (cc=0.5701) | info on Rv3552/- |
| Rv3540c/ltp2 | (cc=0.5684) | info on Rv3540c/ltp2 |
| Rv3614c/espD | (cc=0.5675) | info on Rv3614c/espD |
Correlation of Rv1130/prpD with Rv1129c/-
Normalized LFCs for Rv1130/prpD:
(description and provenance of datasets)
| Rv1130/prpD | Rv1129c/- | |
| Fe_supp_jason_reseq | -0.554 | -0.485 |
| low_pH_jason_reseq | -2.367 | -2.491 |
| NO_jason_reseq | 0.042 | -0.499 |
| B6_jason_reseq | -2.148 | -0.574 |
| MHCII_jason_reseq | -1.471 | -0.478 |
| Isoniazid02 | 0.147 | 0.76 |
| Rifampicin4 | -0.219 | -0.206 |
| Ethambutol3 | 0.181 | 1.282 |
| Meropenem3 | 0.732 | 0.961 |
| Vancomycin16 | 0.138 | 0.098 |
| Rv2680_day32 | -1.446 | -0.382 |
| H37Rv_KO_MarP | -0.302 | 0.309 |
| hypoxia_3wks | -0.686 | -0.53 |
| hypoxia_6wks | 0.259 | 0.777 |
| glycerol | -0.671 | -0.65 |
| cholesterol | -3.292 | -3.06 |
| AJ | -1.852 | -1.378 |
| Bibs02 | -3.513 | -3.031 |
| Bibs02c | -3.471 | -2.084 |
| BL6 | 0.876 | 0.636 |
| BL6a | -1.171 | -0.604 |
| BXD01 | 0.075 | -0.175 |
| BXD010 | 0.237 | -0.172 |
| BXD011 | 0.272 | 0.657 |
| BXD03 | -0.17 | 0.033 |
| BXD04 | -0.06 | 0.075 |
| BXD05 | -0.207 | 0.248 |
| BXD06 | 0.106 | 0.098 |
| BXD07 | 0.2 | 0.068 |
| BXD08 | 0.646 | -0.198 |
| BXD09 | -0.051 | -0.149 |
| CAST | -1.562 | -1.819 |
| CCcont | 0.873 | 0.018 |
| DS01 | -3.537 | -1.928 |
| DS02 | -3.608 | -1.837 |
| DS04 | -1.452 | -0.727 |
| DS0c | -2.596 | -1.439 |
| GP01 | -1.529 | -1.577 |
| GP02 | -0.583 | -1.548 |
| GP0c | -0.096 | -0.958 |
| NOD | -0.054 | 0.028 |
| NZO | -1.982 | -1.056 |
| PWK | -2.011 | -1.348 |
| H37Rv_KO_CtpC | -0.798 | 0.04 |
| H37Rv_KO_CtpD | -0.381 | 0.15 |
| H37Rv_KO_Rv1272 | 0.62 | -0.149 |
| H37Rv_KO_SugABC | -0.024 | -1.284 |
| H37Rv_KO_MbtN | -0.413 | 0.313 |
| Trans05 | 0.241 | -0.805 |
| macrophage_unactivated | -0.997 | -0.767 |
| IL1 | -3.625 | 0.074 |
| Rapamycin | -3.228 | -1.224 |
| Tcell | -2.209 | -2.115 |
| GMCSF | 0.739 | -0.272 |
| IFNab | 1.608 | 0.221 |
| IFNg | -0.139 | -0.572 |
| IFNg_GMCSF1 | 1.012 | 0.229 |
| Rv1432_day32 | -0.19 | -0.562 |
| Rv1565c_day32 | -0.261 | -0.535 |
| secA2_input | -1.005 | -0.637 |
| delta_Rv3594 | 0.347 | 0.895 |
| delta_Rv3717 | 0.428 | 0.818 |
| delta_Rv3811 | 0.47 | 0.608 |
| delta_Rv0954 | 0.884 | -0.24 |
| PonA1 | 0.152 | -0.386 |
| EccD1_KO | 1.145 | 0.22 |
| EspI_KO | 0.359 | -0.411 |
| PE35_KO | 0.971 | 0.563 |
| PPE68_KO | 0.921 | -0.224 |
| glycerol2 | -0.363 | -1.058 |
| lignocerate | -0.514 | -0.648 |
| oleate | -1.27 | -1.07 |
| phosphatidylcholine | -0.717 | -0.895 |
| acetate | 1.232 | -0.03 |
| glucAc | 1.099 | 0.124 |
| Rv0950ko | 0.476 | 0.338 |
| Rv1096ko | 0.265 | 0.947 |
| Rv3684ko | -0.203 | 0.544 |
| delta_otsA_trehalose | 0.846 | -1.23 |