Top 10 genes with highest correlation to Rv0757/phoP:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0758/phoR | (cc=0.8487) | info on Rv0758/phoR |
| Rv2411c/- | (cc=0.6425) | info on Rv2411c/- |
| Rv0043c/- | (cc=0.6174) | info on Rv0043c/- |
| Rv2613c/- | (cc=0.5985) | info on Rv2613c/- |
| Rv3058c/- | (cc=0.5961) | info on Rv3058c/- |
| Rv3534c/hsaF | (cc=0.5949) | info on Rv3534c/hsaF |
| Rv3883c/mycP1 | (cc=0.5916) | info on Rv3883c/mycP1 |
| Rv3849/espR | (cc=0.5912) | info on Rv3849/espR |
| Rv3616c/espA | (cc=0.59) | info on Rv3616c/espA |
| Rv3136/PPE51 | (cc=0.5882) | info on Rv3136/PPE51 |
Correlation of Rv0757/phoP with Rv3849/espR
Normalized LFCs for Rv0757/phoP:
(description and provenance of datasets)
| Rv0757/phoP | Rv3849/espR | |
| Fe_supp_jason_reseq | 3.743 | 2.564 |
| low_pH_jason_reseq | 2.056 | 1.571 |
| NO_jason_reseq | -3.04 | -0.69 |
| B6_jason_reseq | -0.237 | -0.292 |
| MHCII_jason_reseq | -0.839 | -0.257 |
| Isoniazid02 | -2.642 | -3.453 |
| Rifampicin4 | -2.957 | 0.452 |
| Ethambutol3 | 0.242 | -2.122 |
| Meropenem3 | 0.513 | -1.899 |
| Vancomycin16 | -1.345 | 0.133 |
| Rv2680_day32 | 2.066 | -0.131 |
| H37Rv_KO_MarP | 3.807 | -0.157 |
| hypoxia_3wks | -2.628 | -1.511 |
| hypoxia_6wks | -2.76 | -0.791 |
| glycerol | -6.0 | 0.249 |
| cholesterol | -4.916 | 0.882 |
| AJ | -6.0 | -2.123 |
| Bibs02 | -4.225 | -1.491 |
| Bibs02c | -5.058 | -1.914 |
| BL6 | -4.37 | -1.02 |
| BL6a | -5.384 | -1.812 |
| BXD01 | -4.551 | -1.192 |
| BXD010 | -4.347 | -1.172 |
| BXD011 | -3.528 | -0.817 |
| BXD03 | -4.724 | -0.98 |
| BXD04 | -4.321 | -1.131 |
| BXD05 | -4.702 | -1.098 |
| BXD06 | -4.664 | -1.221 |
| BXD07 | -4.838 | -1.267 |
| BXD08 | -4.647 | -1.217 |
| BXD09 | -4.91 | -1.286 |
| CAST | -6.0 | -1.879 |
| CCcont | -0.89 | 1.236 |
| DS01 | -6.0 | -2.161 |
| DS02 | -5.026 | -1.99 |
| DS04 | -5.373 | -1.775 |
| DS0c | -4.737 | 0.093 |
| GP01 | -3.45 | -0.903 |
| GP02 | -2.907 | -0.761 |
| GP0c | -3.904 | -0.834 |
| NOD | -4.535 | -0.548 |
| NZO | -6.0 | -1.627 |
| PWK | -5.89 | -1.795 |
| H37Rv_KO_CtpC | -4.499 | -1.177 |
| H37Rv_KO_CtpD | -3.111 | -0.381 |
| H37Rv_KO_Rv1272 | -4.54 | -1.15 |
| H37Rv_KO_SugABC | -3.362 | -0.906 |
| H37Rv_KO_MbtN | -2.454 | -0.371 |
| Trans05 | -4.206 | -0.947 |
| macrophage_unactivated | -1.96 | 0.436 |
| IL1 | -1.842 | 0.0 |
| Rapamycin | -1.274 | 0.0 |
| Tcell | -1.678 | 0.0 |
| GMCSF | -2.64 | 0.0 |
| IFNab | -3.023 | 0.0 |
| IFNg | -2.673 | 0.0 |
| IFNg_GMCSF1 | -3.142 | 0.0 |
| Rv1432_day32 | 0.458 | -0.18 |
| Rv1565c_day32 | 1.579 | 0.0 |
| secA2_input | -0.238 | 1.024 |
| delta_Rv3594 | -6.0 | -3.244 |
| delta_Rv3717 | -5.163 | -2.624 |
| delta_Rv3811 | -6.0 | -3.771 |
| delta_Rv0954 | -1.579 | -1.38 |
| PonA1 | -0.548 | 3.114 |
| EccD1_KO | -1.174 | -3.256 |
| EspI_KO | -0.416 | -3.069 |
| PE35_KO | 2.173 | 1.756 |
| PPE68_KO | 1.507 | 1.049 |
| glycerol2 | 0.193 | 0.0 |
| lignocerate | 0.0 | 0.0 |
| oleate | 2.935 | 0.0 |
| phosphatidylcholine | 6.0 | 1.769 |
| acetate | 0.0 | 2.1 |
| glucAc | 0.272 | 1.868 |
| Rv0950ko | 0.299 | 0.253 |
| Rv1096ko | 0.0 | -0.106 |
| Rv3684ko | 0.164 | 0.639 |
| delta_otsA_trehalose | -2.245 | 1.157 |