TnSeqCorr

Top 10 genes with highest correlation to Rv0691A/-:

update plotcorrelationlink to info on gene
Rv0841/- (cc=0.5986) info on Rv0841/-
Rv0595c/vapC4 (cc=0.5811) info on Rv0595c/vapC4
Rv0692/- (cc=0.5473) info on Rv0692/-
Rv1999c/- (cc=0.5166) info on Rv1999c/-
Rv3439c/- (cc=0.5003) info on Rv3439c/-
Rv0433/- (cc=0.4969) info on Rv0433/-
Rv2405/- (cc=0.4941) info on Rv2405/-
Rv2727c/miaA (cc=0.4909) info on Rv2727c/miaA
Rv3703c/- (cc=0.488) info on Rv3703c/-
Rv3874/esxB (cc=0.4815) info on Rv3874/esxB

Correlation of Rv0691A/- with Rv3439c/-

Normalized LFCs for Rv0691A/-:
(description and provenance of datasets)
Rv0691A/-Rv3439c/-
Fe_supp_jason_reseq

1.449

-0.661

low_pH_jason_reseq

-1.188

-1.138

NO_jason_reseq

0.0

-0.41

B6_jason_reseq

1.554

0.863

MHCII_jason_reseq

0.545

0.712

Isoniazid02

0.084

0.49

Rifampicin4

0.344

0.501

Ethambutol3

0.326

0.216

Meropenem3

0.476

0.944

Vancomycin16

0.992

0.329

Rv2680_day32

0.0

-0.131

H37Rv_KO_MarP

-0.243

0.008

hypoxia_3wks

-0.678

0.064

hypoxia_6wks

1.733

0.416

glycerol

-0.023

0.831

cholesterol

-2.556

-0.004

AJ

0.077

0.35

Bibs02

-4.059

-0.852

Bibs02c

-2.176

0.596

BL6

-2.901

-0.167

BL6a

-2.87

-0.258

BXD01

-3.021

-0.84

BXD010

-2.971

-0.482

BXD011

-1.044

-0.788

BXD03

-3.137

-0.476

BXD04

-1.684

-1.466

BXD05

-2.987

-0.633

BXD06

-2.441

-0.519

BXD07

-2.443

-0.991

BXD08

-3.085

-0.382

BXD09

-3.26

-0.506

CAST

-2.396

-0.22

CCcont

-2.233

-0.209

DS01

-2.057

0.573

DS02

0.733

0.443

DS04

-0.441

-0.131

DS0c

-1.383

0.234

GP01

0.837

0.022

GP02

-0.584

-0.036

GP0c

1.651

-0.339

NOD

-2.203

-0.739

NZO

-1.313

0.533

PWK

-0.186

0.507

H37Rv_KO_CtpC

-3.458

-1.21

H37Rv_KO_CtpD

0.448

0.156

H37Rv_KO_Rv1272

-0.899

-0.388

H37Rv_KO_SugABC

-2.298

-1.238

H37Rv_KO_MbtN

-2.108

-1.602

Trans05

0.677

-0.711

macrophage_unactivated

2.273

-0.366

IL1

0.475

-0.184

Rapamycin

-0.267

0.301

Tcell

-0.59

-0.831

GMCSF

-1.658

0.584

IFNab

-0.263

-0.284

IFNg

-2.047

0.04

IFNg_GMCSF1

-0.569

-0.452

Rv1432_day32

-0.155

0.057

Rv1565c_day32

0.0

0.464

secA2_input

-2.376

0.299

delta_Rv3594

0.453

1.716

delta_Rv3717

0.593

1.287

delta_Rv3811

0.781

1.184

delta_Rv0954

1.156

2.106

PonA1

2.278

1.384

EccD1_KO

-1.901

-0.141

EspI_KO

-1.968

-0.106

PE35_KO

-2.08

-0.403

PPE68_KO

-1.648

-0.765

glycerol2

1.073

0.394

lignocerate

0.32

0.43

oleate

0.0

-0.37

phosphatidylcholine

0.819

0.09

acetate

0.0

-1.037

glucAc

1.367

-0.233

Rv0950ko

-0.241

-0.112

Rv1096ko

-0.7

0.365

Rv3684ko

1.028

0.039

delta_otsA_trehalose

0.742

0.507