TnSeqCorr

Top 10 genes with highest correlation to Rv0687/-:

update plotcorrelationlink to info on gene
Rv2014/- (cc=0.6039) info on Rv2014/-
Rv1956/higA (cc=0.5553) info on Rv1956/higA
Rv0433/- (cc=0.5512) info on Rv0433/-
Rv0119/fadD7 (cc=0.5434) info on Rv0119/fadD7
Rv2902c/rnhB (cc=0.5391) info on Rv2902c/rnhB
Rv1992c/ctpG (cc=0.5315) info on Rv1992c/ctpG
Rv0325/- (cc=0.5266) info on Rv0325/-
Rv3037c/- (cc=0.5224) info on Rv3037c/-
Rv2323c/- (cc=0.5121) info on Rv2323c/-
Rv2036/- (cc=0.5059) info on Rv2036/-

Correlation of Rv0687/- with Rv0325/-

Normalized LFCs for Rv0687/-:
(description and provenance of datasets)
Rv0687/-Rv0325/-
Fe_supp_jason_reseq

-1.187

-0.933

low_pH_jason_reseq

0.805

-0.1

NO_jason_reseq

0.412

0.459

B6_jason_reseq

-0.312

0.812

MHCII_jason_reseq

-0.311

0.663

Isoniazid02

1.116

2.146

Rifampicin4

1.083

0.0

Ethambutol3

1.198

1.867

Meropenem3

3.163

0.734

Vancomycin16

1.061

0.196

Rv2680_day32

-0.637

0.179

H37Rv_KO_MarP

-0.189

0.226

hypoxia_3wks

-0.311

0.742

hypoxia_6wks

0.867

0.286

glycerol

-0.764

0.048

cholesterol

-0.391

0.406

AJ

0.316

-0.04

Bibs02

-0.624

0.155

Bibs02c

-1.381

-0.755

BL6

-0.89

-1.539

BL6a

-1.075

-0.966

BXD01

-0.518

-0.567

BXD010

-1.907

-1.32

BXD011

-1.009

-0.328

BXD03

-1.15

-1.245

BXD04

-1.209

-1.3

BXD05

-1.271

-1.341

BXD06

-1.261

-0.854

BXD07

-0.847

-1.477

BXD08

-0.091

-0.473

BXD09

-1.374

-1.507

CAST

0.177

0.138

CCcont

-0.403

-1.472

DS01

-0.298

-0.151

DS02

-0.443

-0.997

DS04

0.538

-0.471

DS0c

0.167

0.273

GP01

0.0

-1.378

GP02

-1.195

-0.636

GP0c

0.677

-0.421

NOD

-1.219

-0.099

NZO

0.201

0.156

PWK

-0.026

-0.004

H37Rv_KO_CtpC

0.164

-0.961

H37Rv_KO_CtpD

0.942

-0.729

H37Rv_KO_Rv1272

-0.221

-1.118

H37Rv_KO_SugABC

-0.583

-0.529

H37Rv_KO_MbtN

0.164

-0.872

Trans05

0.513

-0.003

macrophage_unactivated

-1.61

-0.735

IL1

-1.385

-0.32

Rapamycin

-1.841

-0.694

Tcell

-1.522

0.209

GMCSF

-0.082

0.298

IFNab

-1.542

-0.263

IFNg

-1.136

-0.069

IFNg_GMCSF1

0.371

0.16

Rv1432_day32

-0.661

-0.11

Rv1565c_day32

1.469

0.306

secA2_input

0.967

-0.47

delta_Rv3594

1.744

-0.236

delta_Rv3717

1.085

0.121

delta_Rv3811

1.558

0.126

delta_Rv0954

0.238

1.239

PonA1

0.974

0.807

EccD1_KO

-0.187

-0.25

EspI_KO

-0.625

0.117

PE35_KO

-0.455

-0.263

PPE68_KO

-0.499

-0.729

glycerol2

0.635

0.678

lignocerate

0.061

0.183

oleate

0.912

0.872

phosphatidylcholine

0.326

0.657

acetate

-0.266

-0.374

glucAc

0.026

-0.387

Rv0950ko

-0.241

0.467

Rv1096ko

-0.564

-0.341

Rv3684ko

-1.15

-1.1

delta_otsA_trehalose

0.333

-0.601