Top 10 genes with highest correlation to Rv0561c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3283/sseA | (cc=0.7895) | info on Rv3283/sseA |
| Rv0406c/- | (cc=0.74) | info on Rv0406c/- |
| Rv2563/- | (cc=0.7349) | info on Rv2563/- |
| Rv1287/- | (cc=0.6926) | info on Rv1287/- |
| Rv2564/glnQ | (cc=0.6793) | info on Rv2564/glnQ |
| Rv3651/- | (cc=0.6476) | info on Rv3651/- |
| Rv0910/- | (cc=0.6446) | info on Rv0910/- |
| Rv1473/- | (cc=0.6311) | info on Rv1473/- |
| Rv2681/- | (cc=0.6068) | info on Rv2681/- |
| Rv1592c/- | (cc=0.6019) | info on Rv1592c/- |
Correlation of Rv0561c/- with Rv2564/glnQ
Normalized LFCs for Rv0561c/-:
(description and provenance of datasets)
| Rv0561c/- | Rv2564/glnQ | |
| Fe_supp_jason_reseq | 2.559 | 2.013 |
| low_pH_jason_reseq | 0.0 | -0.333 |
| NO_jason_reseq | -0.995 | -1.853 |
| B6_jason_reseq | -0.421 | -1.519 |
| MHCII_jason_reseq | 0.742 | -0.932 |
| Isoniazid02 | -0.045 | 0.036 |
| Rifampicin4 | -1.887 | -2.134 |
| Ethambutol3 | -0.517 | 1.918 |
| Meropenem3 | -0.895 | 0.649 |
| Vancomycin16 | -1.021 | -0.578 |
| Rv2680_day32 | -0.554 | -2.923 |
| H37Rv_KO_MarP | -0.838 | 0.621 |
| hypoxia_3wks | -1.543 | -3.038 |
| hypoxia_6wks | -1.599 | -2.011 |
| glycerol | 2.098 | 0.676 |
| cholesterol | 1.736 | 0.44 |
| AJ | -1.531 | -3.514 |
| Bibs02 | -0.563 | -2.262 |
| Bibs02c | -0.353 | 0.652 |
| BL6 | -2.023 | -2.64 |
| BL6a | -1.148 | -1.086 |
| BXD01 | -2.107 | -3.107 |
| BXD010 | -2.072 | -1.829 |
| BXD011 | -1.711 | -2.911 |
| BXD03 | -2.187 | -1.721 |
| BXD04 | -1.877 | -2.264 |
| BXD05 | -2.042 | -3.076 |
| BXD06 | -2.159 | -2.714 |
| BXD07 | -2.101 | -2.716 |
| BXD08 | -2.151 | -2.704 |
| BXD09 | -2.273 | -3.352 |
| CAST | -2.181 | -0.429 |
| CCcont | -0.552 | 0.355 |
| DS01 | 1.685 | 2.322 |
| DS02 | -0.544 | 0.607 |
| DS04 | -0.911 | 2.805 |
| DS0c | 1.37 | 1.673 |
| GP01 | -1.409 | -2.355 |
| GP02 | -1.263 | -1.985 |
| GP0c | -2.103 | -3.102 |
| NOD | -0.903 | 0.552 |
| NZO | -2.381 | -2.766 |
| PWK | -1.137 | 1.212 |
| H37Rv_KO_CtpC | -0.941 | -0.95 |
| H37Rv_KO_CtpD | -1.603 | -0.764 |
| H37Rv_KO_Rv1272 | -0.872 | -1.846 |
| H37Rv_KO_SugABC | -1.414 | -1.5 |
| H37Rv_KO_MbtN | -1.471 | -1.952 |
| Trans05 | -1.983 | -2.986 |
| macrophage_unactivated | -0.316 | 0.947 |
| IL1 | -1.735 | -1.818 |
| Rapamycin | -1.795 | -0.543 |
| Tcell | -0.671 | 0.0 |
| GMCSF | -1.18 | 0.671 |
| IFNab | -0.623 | 0.163 |
| IFNg | -1.195 | -1.013 |
| IFNg_GMCSF1 | -0.314 | -0.179 |
| Rv1432_day32 | -0.632 | -3.206 |
| Rv1565c_day32 | 0.0 | -0.509 |
| secA2_input | 0.676 | -1.198 |
| delta_Rv3594 | -0.684 | -2.272 |
| delta_Rv3717 | -0.736 | -1.869 |
| delta_Rv3811 | -0.665 | -1.817 |
| delta_Rv0954 | 2.95 | 1.292 |
| PonA1 | 2.163 | 2.505 |
| EccD1_KO | -0.26 | 0.0 |
| EspI_KO | 0.739 | -0.274 |
| PE35_KO | 0.496 | 1.126 |
| PPE68_KO | 0.394 | 0.816 |
| glycerol2 | -1.366 | -1.572 |
| lignocerate | -0.759 | -0.049 |
| oleate | -3.187 | -2.139 |
| phosphatidylcholine | -0.036 | -0.874 |
| acetate | 1.25 | 1.119 |
| glucAc | 0.853 | 0.357 |
| Rv0950ko | -0.989 | 1.414 |
| Rv1096ko | -0.549 | 0.549 |
| Rv3684ko | -0.596 | 0.088 |
| delta_otsA_trehalose | -0.234 | 1.289 |