Top 10 genes with highest correlation to Rv0504c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1432/- | (cc=0.5909) | info on Rv1432/- |
| Rv0411c/glnH | (cc=0.5876) | info on Rv0411c/glnH |
| Rv0126/treS | (cc=0.5539) | info on Rv0126/treS |
| Rv0410c/pknG | (cc=0.5536) | info on Rv0410c/pknG |
| Rv2894c/xerC | (cc=0.5312) | info on Rv2894c/xerC |
| Rv2051c/ppm1 | (cc=0.5258) | info on Rv2051c/ppm1 |
| Rv0470c/pcaA | (cc=0.5208) | info on Rv0470c/pcaA |
| Rv0412c/- | (cc=0.5071) | info on Rv0412c/- |
| Rv1348/irtA | (cc=0.5071) | info on Rv1348/irtA |
| Rv2737c/recA | (cc=0.4955) | info on Rv2737c/recA |
Correlation of Rv0504c/- with Rv1432/-
Normalized LFCs for Rv0504c/-:
(description and provenance of datasets)
| Rv0504c/- | Rv1432/- | |
| Fe_supp_jason_reseq | 1.68 | 4.011 |
| low_pH_jason_reseq | -0.231 | 0.211 |
| NO_jason_reseq | -0.362 | -0.362 |
| B6_jason_reseq | -0.153 | 0.0 |
| MHCII_jason_reseq | -0.135 | -0.135 |
| Isoniazid02 | 0.383 | -0.668 |
| Rifampicin4 | 0.0 | 0.341 |
| Ethambutol3 | 0.0 | 0.116 |
| Meropenem3 | 0.0 | -0.662 |
| Vancomycin16 | 0.0 | -0.271 |
| Rv2680_day32 | -2.085 | 0.0 |
| H37Rv_KO_MarP | -2.565 | -2.905 |
| hypoxia_3wks | -1.049 | -1.049 |
| hypoxia_6wks | -0.263 | -0.549 |
| glycerol | 0.439 | 1.788 |
| cholesterol | -0.398 | -0.276 |
| AJ | -0.637 | -0.442 |
| Bibs02 | 0.725 | -0.348 |
| Bibs02c | -0.574 | -0.191 |
| BL6 | -0.343 | -0.238 |
| BL6a | -0.544 | -0.377 |
| BXD01 | -0.358 | -0.248 |
| BXD010 | -0.352 | -0.244 |
| BXD011 | 0.759 | 0.106 |
| BXD03 | -0.371 | -0.258 |
| BXD04 | -0.34 | -0.236 |
| BXD05 | -0.369 | -0.256 |
| BXD06 | -0.366 | 0.0 |
| BXD07 | -0.38 | -0.126 |
| BXD08 | -0.365 | 0.0 |
| BXD09 | -0.386 | -0.268 |
| CAST | -0.632 | -0.439 |
| CCcont | 2.776 | 2.901 |
| DS01 | -0.412 | -0.216 |
| DS02 | -0.597 | -0.414 |
| DS04 | -0.533 | -0.177 |
| DS0c | 1.087 | -0.413 |
| GP01 | -0.271 | -0.188 |
| GP02 | -0.228 | -0.159 |
| GP0c | -0.357 | -0.248 |
| NOD | -0.392 | -0.428 |
| NZO | -0.548 | -0.38 |
| PWK | -0.539 | -0.374 |
| H37Rv_KO_CtpC | 0.0 | -0.309 |
| H37Rv_KO_CtpD | 0.189 | -0.116 |
| H37Rv_KO_Rv1272 | -0.246 | -0.269 |
| H37Rv_KO_SugABC | -0.272 | -0.189 |
| H37Rv_KO_MbtN | 0.224 | 0.0 |
| Trans05 | -0.228 | -0.249 |
| macrophage_unactivated | 0.436 | 1.708 |
| IL1 | 0.0 | 0.0 |
| Rapamycin | 0.0 | 0.0 |
| Tcell | 1.235 | 1.763 |
| GMCSF | 0.0 | 0.0 |
| IFNab | 0.417 | -0.417 |
| IFNg | 0.0 | -0.369 |
| IFNg_GMCSF1 | 0.0 | -0.434 |
| Rv1432_day32 | -0.494 | 0.0 |
| Rv1565c_day32 | -0.924 | -0.655 |
| secA2_input | -1.731 | -0.931 |
| delta_Rv3594 | 0.197 | 0.164 |
| delta_Rv3717 | 0.536 | -0.477 |
| delta_Rv3811 | -0.529 | -0.171 |
| delta_Rv0954 | 1.076 | 3.111 |
| PonA1 | 1.547 | 0.238 |
| EccD1_KO | 0.51 | 0.839 |
| EspI_KO | -0.408 | 0.616 |
| PE35_KO | 1.625 | 2.984 |
| PPE68_KO | 0.723 | 2.115 |
| glycerol2 | -0.82 | -1.998 |
| lignocerate | -0.712 | -2.562 |
| oleate | -0.829 | -2.983 |
| phosphatidylcholine | -0.819 | -2.267 |
| acetate | -0.973 | -0.863 |
| glucAc | -0.605 | -0.307 |
| Rv0950ko | 1.481 | -1.429 |
| Rv1096ko | 0.85 | -2.524 |
| Rv3684ko | 0.249 | -2.823 |
| delta_otsA_trehalose | -0.818 | -1.72 |