Top 10 genes with highest correlation to Rv0200/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0199/- | (cc=0.83) | info on Rv0199/- |
| Rv3723/- | (cc=0.7693) | info on Rv3723/- |
| Rv0655/mkl | (cc=0.7126) | info on Rv0655/mkl |
| Rv0174/mce1F | (cc=0.7052) | info on Rv0174/mce1F |
| Rv0169/mce1A | (cc=0.6652) | info on Rv0169/mce1A |
| Rv1405c/- | (cc=0.6508) | info on Rv1405c/- |
| Rv0172/mce1D | (cc=0.6489) | info on Rv0172/mce1D |
| Rv0173/lprK | (cc=0.6354) | info on Rv0173/lprK |
| Rv0175/- | (cc=0.6347) | info on Rv0175/- |
| Rv3484/cpsA | (cc=0.632) | info on Rv3484/cpsA |
Correlation of Rv0200/- with Rv0655/mkl
Normalized LFCs for Rv0200/-:
(description and provenance of datasets)
| Rv0200/- | Rv0655/mkl | |
| Fe_supp_jason_reseq | -1.018 | -0.355 |
| low_pH_jason_reseq | 0.482 | 0.03 |
| NO_jason_reseq | 2.578 | 2.481 |
| B6_jason_reseq | -1.954 | -1.246 |
| MHCII_jason_reseq | -2.778 | -1.981 |
| Isoniazid02 | -0.204 | -0.429 |
| Rifampicin4 | 2.125 | 0.634 |
| Ethambutol3 | -0.045 | -0.857 |
| Meropenem3 | 1.61 | 0.377 |
| Vancomycin16 | 2.228 | 1.366 |
| Rv2680_day32 | -2.419 | -1.955 |
| H37Rv_KO_MarP | -0.087 | 0.948 |
| hypoxia_3wks | 3.042 | 2.44 |
| hypoxia_6wks | 2.907 | 2.144 |
| glycerol | -1.358 | -0.578 |
| cholesterol | 2.34 | -2.106 |
| AJ | -2.573 | -3.419 |
| Bibs02 | -3.424 | -2.73 |
| Bibs02c | -3.606 | -1.784 |
| BL6 | -1.715 | -1.039 |
| BL6a | -2.356 | -1.964 |
| BXD01 | -0.451 | -2.026 |
| BXD010 | 0.472 | -1.254 |
| BXD011 | 0.22 | -1.248 |
| BXD03 | 1.553 | -1.682 |
| BXD04 | -0.549 | -0.902 |
| BXD05 | -0.346 | -1.881 |
| BXD06 | -0.593 | -2.291 |
| BXD07 | -0.057 | -1.306 |
| BXD08 | -0.319 | -1.741 |
| BXD09 | 0.437 | -1.661 |
| CAST | -2.466 | -3.394 |
| CCcont | 0.698 | -0.752 |
| DS01 | -3.239 | -3.995 |
| DS02 | -1.2 | -2.185 |
| DS04 | -2.566 | -2.641 |
| DS0c | -2.167 | -4.563 |
| GP01 | -1.849 | -0.069 |
| GP02 | -1.627 | -1.78 |
| GP0c | 0.017 | -0.52 |
| NOD | -2.672 | -2.314 |
| NZO | -0.225 | -2.358 |
| PWK | -3.123 | -2.568 |
| H37Rv_KO_CtpC | -0.474 | -1.532 |
| H37Rv_KO_CtpD | -1.265 | -0.609 |
| H37Rv_KO_Rv1272 | 0.351 | -1.689 |
| H37Rv_KO_SugABC | -0.189 | 1.066 |
| H37Rv_KO_MbtN | 0.235 | 0.545 |
| Trans05 | -0.452 | 0.091 |
| macrophage_unactivated | -1.436 | -2.304 |
| IL1 | 1.56 | 1.204 |
| Rapamycin | 1.63 | 0.924 |
| Tcell | -1.3 | -1.919 |
| GMCSF | -0.227 | -0.686 |
| IFNab | -0.466 | -0.375 |
| IFNg | 0.286 | -0.89 |
| IFNg_GMCSF1 | -1.31 | -0.167 |
| Rv1432_day32 | -3.027 | -1.7 |
| Rv1565c_day32 | -4.235 | -2.766 |
| secA2_input | -1.008 | 0.283 |
| delta_Rv3594 | 0.185 | -0.41 |
| delta_Rv3717 | 0.131 | 0.008 |
| delta_Rv3811 | -0.653 | -0.33 |
| delta_Rv0954 | -0.275 | -0.336 |
| PonA1 | 0.944 | 0.007 |
| EccD1_KO | 1.464 | 0.513 |
| EspI_KO | 0.365 | 0.702 |
| PE35_KO | -0.767 | -0.163 |
| PPE68_KO | 0.291 | -0.202 |
| glycerol2 | -0.918 | -2.294 |
| lignocerate | -1.93 | -2.4 |
| oleate | 1.662 | -0.208 |
| phosphatidylcholine | -0.592 | -1.737 |
| acetate | 1.485 | -0.74 |
| glucAc | 0.338 | -0.861 |
| Rv0950ko | 1.39 | -0.404 |
| Rv1096ko | 0.959 | 0.368 |
| Rv3684ko | -0.318 | 0.422 |
| delta_otsA_trehalose | 0.392 | -0.57 |