Top 10 genes with highest correlation to Rv0200/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0199/- | (cc=0.83) | info on Rv0199/- |
| Rv3723/- | (cc=0.7693) | info on Rv3723/- |
| Rv0655/mkl | (cc=0.7126) | info on Rv0655/mkl |
| Rv0174/mce1F | (cc=0.7052) | info on Rv0174/mce1F |
| Rv0169/mce1A | (cc=0.6652) | info on Rv0169/mce1A |
| Rv1405c/- | (cc=0.6508) | info on Rv1405c/- |
| Rv0172/mce1D | (cc=0.6489) | info on Rv0172/mce1D |
| Rv0173/lprK | (cc=0.6354) | info on Rv0173/lprK |
| Rv0175/- | (cc=0.6347) | info on Rv0175/- |
| Rv3484/cpsA | (cc=0.632) | info on Rv3484/cpsA |
Correlation of Rv0200/- with Rv0172/mce1D
Normalized LFCs for Rv0200/-:
(description and provenance of datasets)
| Rv0200/- | Rv0172/mce1D | |
| Fe_supp_jason_reseq | -1.018 | 0.494 |
| low_pH_jason_reseq | 0.482 | 0.942 |
| NO_jason_reseq | 2.578 | 2.326 |
| B6_jason_reseq | -1.954 | 0.236 |
| MHCII_jason_reseq | -2.778 | -0.915 |
| Isoniazid02 | -0.204 | -1.544 |
| Rifampicin4 | 2.125 | 1.638 |
| Ethambutol3 | -0.045 | 0.285 |
| Meropenem3 | 1.61 | 1.174 |
| Vancomycin16 | 2.228 | 1.125 |
| Rv2680_day32 | -2.419 | 0.036 |
| H37Rv_KO_MarP | -0.087 | 0.494 |
| hypoxia_3wks | 3.042 | 1.786 |
| hypoxia_6wks | 2.907 | 1.625 |
| glycerol | -1.358 | -0.856 |
| cholesterol | 2.34 | 0.313 |
| AJ | -2.573 | -0.134 |
| Bibs02 | -3.424 | -2.327 |
| Bibs02c | -3.606 | -2.543 |
| BL6 | -1.715 | 0.729 |
| BL6a | -2.356 | -0.946 |
| BXD01 | -0.451 | 0.643 |
| BXD010 | 0.472 | 0.201 |
| BXD011 | 0.22 | 0.468 |
| BXD03 | 1.553 | 0.722 |
| BXD04 | -0.549 | 0.686 |
| BXD05 | -0.346 | 0.515 |
| BXD06 | -0.593 | -0.318 |
| BXD07 | -0.057 | 0.764 |
| BXD08 | -0.319 | 0.006 |
| BXD09 | 0.437 | 0.98 |
| CAST | -2.466 | -1.18 |
| CCcont | 0.698 | 0.201 |
| DS01 | -3.239 | -3.042 |
| DS02 | -1.2 | -2.614 |
| DS04 | -2.566 | -0.652 |
| DS0c | -2.167 | -2.49 |
| GP01 | -1.849 | -1.38 |
| GP02 | -1.627 | -1.297 |
| GP0c | 0.017 | -0.704 |
| NOD | -2.672 | -0.314 |
| NZO | -0.225 | 0.996 |
| PWK | -3.123 | -1.404 |
| H37Rv_KO_CtpC | -0.474 | -0.765 |
| H37Rv_KO_CtpD | -1.265 | -0.05 |
| H37Rv_KO_Rv1272 | 0.351 | -0.018 |
| H37Rv_KO_SugABC | -0.189 | 0.329 |
| H37Rv_KO_MbtN | 0.235 | -0.281 |
| Trans05 | -0.452 | 0.011 |
| macrophage_unactivated | -1.436 | -0.193 |
| IL1 | 1.56 | -1.714 |
| Rapamycin | 1.63 | -1.596 |
| Tcell | -1.3 | -1.603 |
| GMCSF | -0.227 | 0.187 |
| IFNab | -0.466 | 0.366 |
| IFNg | 0.286 | 0.323 |
| IFNg_GMCSF1 | -1.31 | -0.324 |
| Rv1432_day32 | -3.027 | 0.162 |
| Rv1565c_day32 | -4.235 | -1.813 |
| secA2_input | -1.008 | -0.18 |
| delta_Rv3594 | 0.185 | 0.177 |
| delta_Rv3717 | 0.131 | 0.364 |
| delta_Rv3811 | -0.653 | -0.245 |
| delta_Rv0954 | -0.275 | 0.191 |
| PonA1 | 0.944 | 0.201 |
| EccD1_KO | 1.464 | 0.155 |
| EspI_KO | 0.365 | -0.302 |
| PE35_KO | -0.767 | -0.018 |
| PPE68_KO | 0.291 | 0.0 |
| glycerol2 | -0.918 | 0.121 |
| lignocerate | -1.93 | -2.221 |
| oleate | 1.662 | 0.855 |
| phosphatidylcholine | -0.592 | -0.546 |
| acetate | 1.485 | 0.904 |
| glucAc | 0.338 | 0.288 |
| Rv0950ko | 1.39 | 0.112 |
| Rv1096ko | 0.959 | -0.57 |
| Rv3684ko | -0.318 | 0.747 |
| delta_otsA_trehalose | 0.392 | -0.065 |