Top 10 genes with highest correlation to Rv0080/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1180/pks3 | (cc=0.634) | info on Rv1180/pks3 |
| Rv3401/- | (cc=0.6148) | info on Rv3401/- |
| Rv0228/- | (cc=0.6048) | info on Rv0228/- |
| Rv0359/- | (cc=0.5985) | info on Rv0359/- |
| Rv2681/- | (cc=0.5914) | info on Rv2681/- |
| Rv3328c/sigJ | (cc=0.5856) | info on Rv3328c/sigJ |
| Rv1323/fadA4 | (cc=0.5808) | info on Rv1323/fadA4 |
| Rv1864c/- | (cc=0.5798) | info on Rv1864c/- |
| Rv3605c/- | (cc=0.5763) | info on Rv3605c/- |
| Rv2636/- | (cc=0.5705) | info on Rv2636/- |
Correlation of Rv0080/- with Rv3401/-
Normalized LFCs for Rv0080/-:
(description and provenance of datasets)
| Rv0080/- | Rv3401/- | |
| Fe_supp_jason_reseq | 0.9 | 0.0 |
| low_pH_jason_reseq | 0.023 | -0.659 |
| NO_jason_reseq | 0.79 | -0.026 |
| B6_jason_reseq | 1.457 | 0.695 |
| MHCII_jason_reseq | 1.207 | 0.952 |
| Isoniazid02 | -0.457 | 0.383 |
| Rifampicin4 | 0.625 | 0.244 |
| Ethambutol3 | 0.019 | 0.72 |
| Meropenem3 | 0.444 | 1.518 |
| Vancomycin16 | -0.17 | -0.082 |
| Rv2680_day32 | -0.528 | 1.336 |
| H37Rv_KO_MarP | 0.406 | 0.23 |
| hypoxia_3wks | -0.299 | -0.068 |
| hypoxia_6wks | -0.088 | -0.035 |
| glycerol | 0.323 | -0.053 |
| cholesterol | 0.639 | 1.523 |
| AJ | -0.83 | -0.131 |
| Bibs02 | 0.293 | 0.567 |
| Bibs02c | 0.671 | -0.156 |
| BL6 | -1.359 | -0.906 |
| BL6a | -0.496 | -0.97 |
| BXD01 | -2.397 | -0.89 |
| BXD010 | -3.903 | -0.854 |
| BXD011 | -0.923 | -0.556 |
| BXD03 | -2.024 | -0.564 |
| BXD04 | -1.101 | -0.606 |
| BXD05 | -2.194 | -0.793 |
| BXD06 | -2.074 | -1.097 |
| BXD07 | -1.874 | -0.687 |
| BXD08 | -2.972 | -0.624 |
| BXD09 | -2.886 | -0.892 |
| CAST | 0.888 | 0.269 |
| CCcont | -3.139 | -1.095 |
| DS01 | 0.664 | 0.548 |
| DS02 | 0.304 | 0.421 |
| DS04 | -0.649 | 0.602 |
| DS0c | 0.514 | 0.404 |
| GP01 | -0.1 | 0.349 |
| GP02 | -0.245 | 0.307 |
| GP0c | -0.842 | -0.109 |
| NOD | 0.802 | 0.906 |
| NZO | -0.78 | -0.205 |
| PWK | 0.496 | -0.354 |
| H37Rv_KO_CtpC | -0.917 | -0.54 |
| H37Rv_KO_CtpD | 0.246 | 0.537 |
| H37Rv_KO_Rv1272 | -1.908 | -0.305 |
| H37Rv_KO_SugABC | -2.301 | -0.478 |
| H37Rv_KO_MbtN | -0.418 | -0.036 |
| Trans05 | -3.831 | 0.384 |
| macrophage_unactivated | -1.869 | -0.925 |
| IL1 | -1.634 | -0.97 |
| Rapamycin | -1.568 | -0.829 |
| Tcell | -1.118 | -0.671 |
| GMCSF | -2.867 | -0.57 |
| IFNab | 0.323 | -1.022 |
| IFNg | -2.186 | -0.123 |
| IFNg_GMCSF1 | 1.046 | 0.251 |
| Rv1432_day32 | 1.068 | 0.757 |
| Rv1565c_day32 | 2.105 | 0.763 |
| secA2_input | 0.684 | 0.261 |
| delta_Rv3594 | -1.398 | -0.223 |
| delta_Rv3717 | -0.278 | -0.227 |
| delta_Rv3811 | -0.471 | -0.235 |
| delta_Rv0954 | -0.168 | 0.088 |
| PonA1 | 0.185 | 0.323 |
| EccD1_KO | 0.22 | -0.033 |
| EspI_KO | 0.191 | -0.086 |
| PE35_KO | -1.178 | -0.146 |
| PPE68_KO | -0.768 | -0.16 |
| glycerol2 | -0.429 | 0.083 |
| lignocerate | -0.726 | -0.571 |
| oleate | -1.035 | -0.647 |
| phosphatidylcholine | -0.542 | -0.13 |
| acetate | 0.136 | -0.191 |
| glucAc | 0.434 | -0.389 |
| Rv0950ko | 0.25 | 0.093 |
| Rv1096ko | 0.25 | 0.184 |
| Rv3684ko | -0.246 | -0.105 |
| delta_otsA_trehalose | -1.073 | 0.465 |