Top 10 genes with highest correlation to Rv0080/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1180/pks3 | (cc=0.634) | info on Rv1180/pks3 |
| Rv3401/- | (cc=0.6148) | info on Rv3401/- |
| Rv0228/- | (cc=0.6048) | info on Rv0228/- |
| Rv0359/- | (cc=0.5985) | info on Rv0359/- |
| Rv2681/- | (cc=0.5914) | info on Rv2681/- |
| Rv3328c/sigJ | (cc=0.5856) | info on Rv3328c/sigJ |
| Rv1323/fadA4 | (cc=0.5808) | info on Rv1323/fadA4 |
| Rv1864c/- | (cc=0.5798) | info on Rv1864c/- |
| Rv3605c/- | (cc=0.5763) | info on Rv3605c/- |
| Rv2636/- | (cc=0.5705) | info on Rv2636/- |
Correlation of Rv0080/- with Rv0359/-
Normalized LFCs for Rv0080/-:
(description and provenance of datasets)
| Rv0080/- | Rv0359/- | |
| Fe_supp_jason_reseq | 0.9 | 0.095 |
| low_pH_jason_reseq | 0.023 | -1.012 |
| NO_jason_reseq | 0.79 | 0.837 |
| B6_jason_reseq | 1.457 | 0.692 |
| MHCII_jason_reseq | 1.207 | 1.3 |
| Isoniazid02 | -0.457 | 0.764 |
| Rifampicin4 | 0.625 | 0.097 |
| Ethambutol3 | 0.019 | 0.086 |
| Meropenem3 | 0.444 | 0.109 |
| Vancomycin16 | -0.17 | -0.17 |
| Rv2680_day32 | -0.528 | -0.023 |
| H37Rv_KO_MarP | 0.406 | 0.272 |
| hypoxia_3wks | -0.299 | -0.12 |
| hypoxia_6wks | -0.088 | -0.079 |
| glycerol | 0.323 | 0.453 |
| cholesterol | 0.639 | -0.176 |
| AJ | -0.83 | 0.363 |
| Bibs02 | 0.293 | 0.277 |
| Bibs02c | 0.671 | 0.053 |
| BL6 | -1.359 | -0.976 |
| BL6a | -0.496 | -0.726 |
| BXD01 | -2.397 | -0.705 |
| BXD010 | -3.903 | -0.867 |
| BXD011 | -0.923 | -0.706 |
| BXD03 | -2.024 | -1.073 |
| BXD04 | -1.101 | -1.555 |
| BXD05 | -2.194 | -1.302 |
| BXD06 | -2.074 | -1.334 |
| BXD07 | -1.874 | -1.084 |
| BXD08 | -2.972 | -1.029 |
| BXD09 | -2.886 | -1.134 |
| CAST | 0.888 | 0.657 |
| CCcont | -3.139 | -1.909 |
| DS01 | 0.664 | 0.53 |
| DS02 | 0.304 | 0.485 |
| DS04 | -0.649 | 0.111 |
| DS0c | 0.514 | 0.528 |
| GP01 | -0.1 | 0.353 |
| GP02 | -0.245 | 0.863 |
| GP0c | -0.842 | -0.377 |
| NOD | 0.802 | 0.135 |
| NZO | -0.78 | 0.097 |
| PWK | 0.496 | 0.115 |
| H37Rv_KO_CtpC | -0.917 | -1.181 |
| H37Rv_KO_CtpD | 0.246 | -0.874 |
| H37Rv_KO_Rv1272 | -1.908 | -1.584 |
| H37Rv_KO_SugABC | -2.301 | -0.397 |
| H37Rv_KO_MbtN | -0.418 | -0.62 |
| Trans05 | -3.831 | -0.053 |
| macrophage_unactivated | -1.869 | -2.093 |
| IL1 | -1.634 | -1.848 |
| Rapamycin | -1.568 | -1.393 |
| Tcell | -1.118 | -1.092 |
| GMCSF | -2.867 | -1.09 |
| IFNab | 0.323 | -2.053 |
| IFNg | -2.186 | -1.05 |
| IFNg_GMCSF1 | 1.046 | -0.594 |
| Rv1432_day32 | 1.068 | 0.786 |
| Rv1565c_day32 | 2.105 | -0.547 |
| secA2_input | 0.684 | 0.38 |
| delta_Rv3594 | -1.398 | -1.115 |
| delta_Rv3717 | -0.278 | 0.013 |
| delta_Rv3811 | -0.471 | -1.166 |
| delta_Rv0954 | -0.168 | -0.841 |
| PonA1 | 0.185 | -0.262 |
| EccD1_KO | 0.22 | 0.062 |
| EspI_KO | 0.191 | 0.054 |
| PE35_KO | -1.178 | -0.747 |
| PPE68_KO | -0.768 | -0.982 |
| glycerol2 | -0.429 | -0.053 |
| lignocerate | -0.726 | -0.349 |
| oleate | -1.035 | 0.023 |
| phosphatidylcholine | -0.542 | -0.038 |
| acetate | 0.136 | -0.72 |
| glucAc | 0.434 | -0.134 |
| Rv0950ko | 0.25 | 0.597 |
| Rv1096ko | 0.25 | 0.881 |
| Rv3684ko | -0.246 | 0.648 |
| delta_otsA_trehalose | -1.073 | -2.016 |