Top 10 genes with highest correlation to Rv0029/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3209/- | (cc=0.4094) | info on Rv3209/- |
| Rv0022c/whiB5 | (cc=0.3829) | info on Rv0022c/whiB5 |
| Rv2946c/pks1 | (cc=0.3783) | info on Rv2946c/pks1 |
| Rv0320/- | (cc=0.3756) | info on Rv0320/- |
| Rv1235/lpqY | (cc=0.3731) | info on Rv1235/lpqY |
| Rv0117/oxyS | (cc=0.3724) | info on Rv0117/oxyS |
| Rv3444c/esxT | (cc=0.3585) | info on Rv3444c/esxT |
| Rv3445c/esxU | (cc=0.3585) | info on Rv3445c/esxU |
| Rv1031/kdpC | (cc=0.3419) | info on Rv1031/kdpC |
| Rv2831/echA16 | (cc=0.3416) | info on Rv2831/echA16 |
Correlation of Rv0029/- with Rv3445c/esxU
Normalized LFCs for Rv0029/-:
(description and provenance of datasets)
| Rv0029/- | Rv3445c/esxU | |
| Fe_supp_jason_reseq | -0.568 | -0.854 |
| low_pH_jason_reseq | -0.346 | -0.778 |
| NO_jason_reseq | -0.181 | 0.011 |
| B6_jason_reseq | 0.142 | 1.196 |
| MHCII_jason_reseq | 0.125 | 1.337 |
| Isoniazid02 | -0.367 | 0.106 |
| Rifampicin4 | -0.536 | -0.208 |
| Ethambutol3 | -0.011 | 0.054 |
| Meropenem3 | -0.289 | 1.584 |
| Vancomycin16 | 0.329 | -0.061 |
| Rv2680_day32 | -1.486 | -0.72 |
| H37Rv_KO_MarP | 0.463 | -0.801 |
| hypoxia_3wks | 0.478 | -0.379 |
| hypoxia_6wks | 0.595 | -0.205 |
| glycerol | -1.197 | -1.697 |
| cholesterol | 1.245 | -0.468 |
| AJ | 0.4 | -0.069 |
| Bibs02 | 0.335 | 0.633 |
| Bibs02c | -0.39 | 0.33 |
| BL6 | -0.486 | -1.139 |
| BL6a | -0.56 | -0.598 |
| BXD01 | -0.172 | -0.715 |
| BXD010 | -0.2 | -1.243 |
| BXD011 | 0.0 | -0.593 |
| BXD03 | 0.314 | -0.593 |
| BXD04 | 0.649 | -0.114 |
| BXD05 | -0.403 | -1.909 |
| BXD06 | -0.384 | -1.022 |
| BXD07 | -0.884 | -1.357 |
| BXD08 | -0.476 | -0.366 |
| BXD09 | -0.365 | -1.355 |
| CAST | -0.637 | -0.158 |
| CCcont | -0.58 | -1.298 |
| DS01 | 0.099 | 0.956 |
| DS02 | 0.271 | 1.1 |
| DS04 | -0.371 | 0.305 |
| DS0c | 0.152 | 0.544 |
| GP01 | -0.179 | 0.275 |
| GP02 | -0.462 | 0.421 |
| GP0c | 0.091 | 0.528 |
| NOD | -0.698 | -0.83 |
| NZO | -0.14 | -0.335 |
| PWK | -0.355 | -0.033 |
| H37Rv_KO_CtpC | -0.938 | -0.86 |
| H37Rv_KO_CtpD | -0.262 | -3.872 |
| H37Rv_KO_Rv1272 | -1.167 | -3.257 |
| H37Rv_KO_SugABC | 0.263 | -1.838 |
| H37Rv_KO_MbtN | 0.69 | -0.933 |
| Trans05 | 0.092 | -1.718 |
| macrophage_unactivated | -0.142 | 0.379 |
| IL1 | 0.021 | -0.214 |
| Rapamycin | 0.046 | -0.301 |
| Tcell | 0.094 | 0.254 |
| GMCSF | 0.04 | 0.528 |
| IFNab | 0.218 | -0.2 |
| IFNg | -0.182 | -1.053 |
| IFNg_GMCSF1 | -0.069 | 1.109 |
| Rv1432_day32 | 0.0 | 0.567 |
| Rv1565c_day32 | -0.204 | 0.232 |
| secA2_input | -0.127 | 2.519 |
| delta_Rv3594 | -0.098 | 0.0 |
| delta_Rv3717 | -0.278 | -0.189 |
| delta_Rv3811 | -0.067 | -0.335 |
| delta_Rv0954 | 0.402 | 0.758 |
| PonA1 | 0.774 | 0.427 |
| EccD1_KO | -1.135 | 0.47 |
| EspI_KO | -0.151 | 0.747 |
| PE35_KO | 0.172 | 1.158 |
| PPE68_KO | -0.074 | -0.022 |
| glycerol2 | 0.439 | 0.867 |
| lignocerate | -0.226 | 0.96 |
| oleate | 0.503 | 0.988 |
| phosphatidylcholine | 0.083 | 0.81 |
| acetate | -0.708 | 1.335 |
| glucAc | -1.013 | 0.023 |
| Rv0950ko | 0.32 | 1.375 |
| Rv1096ko | 0.344 | 2.576 |
| Rv3684ko | 0.999 | 1.772 |
| delta_otsA_trehalose | -0.596 | -1.792 |