Top 10 genes with highest correlation to Rv0029/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3209/- | (cc=0.4094) | info on Rv3209/- |
| Rv0022c/whiB5 | (cc=0.3829) | info on Rv0022c/whiB5 |
| Rv2946c/pks1 | (cc=0.3783) | info on Rv2946c/pks1 |
| Rv0320/- | (cc=0.3756) | info on Rv0320/- |
| Rv1235/lpqY | (cc=0.3731) | info on Rv1235/lpqY |
| Rv0117/oxyS | (cc=0.3724) | info on Rv0117/oxyS |
| Rv3444c/esxT | (cc=0.3585) | info on Rv3444c/esxT |
| Rv3445c/esxU | (cc=0.3585) | info on Rv3445c/esxU |
| Rv1031/kdpC | (cc=0.3419) | info on Rv1031/kdpC |
| Rv2831/echA16 | (cc=0.3416) | info on Rv2831/echA16 |
Correlation of Rv0029/- with Rv3444c/esxT
Normalized LFCs for Rv0029/-:
(description and provenance of datasets)
| Rv0029/- | Rv3444c/esxT | |
| Fe_supp_jason_reseq | -0.568 | -0.077 |
| low_pH_jason_reseq | -0.346 | 0.0 |
| NO_jason_reseq | -0.181 | 0.123 |
| B6_jason_reseq | 0.142 | 0.136 |
| MHCII_jason_reseq | 0.125 | 0.72 |
| Isoniazid02 | -0.367 | 0.343 |
| Rifampicin4 | -0.536 | -0.219 |
| Ethambutol3 | -0.011 | -0.315 |
| Meropenem3 | -0.289 | 0.047 |
| Vancomycin16 | 0.329 | 0.446 |
| Rv2680_day32 | -1.486 | -1.002 |
| H37Rv_KO_MarP | 0.463 | 0.317 |
| hypoxia_3wks | 0.478 | 0.311 |
| hypoxia_6wks | 0.595 | 0.461 |
| glycerol | -1.197 | -0.506 |
| cholesterol | 1.245 | -0.332 |
| AJ | 0.4 | -1.54 |
| Bibs02 | 0.335 | 1.068 |
| Bibs02c | -0.39 | -0.697 |
| BL6 | -0.486 | -1.834 |
| BL6a | -0.56 | -0.344 |
| BXD01 | -0.172 | -0.217 |
| BXD010 | -0.2 | -1.091 |
| BXD011 | 0.0 | 0.576 |
| BXD03 | 0.314 | 0.502 |
| BXD04 | 0.649 | -0.834 |
| BXD05 | -0.403 | -1.03 |
| BXD06 | -0.384 | -0.424 |
| BXD07 | -0.884 | -1.059 |
| BXD08 | -0.476 | -0.412 |
| BXD09 | -0.365 | -0.125 |
| CAST | -0.637 | 0.454 |
| CCcont | -0.58 | -1.848 |
| DS01 | 0.099 | 0.329 |
| DS02 | 0.271 | -0.025 |
| DS04 | -0.371 | 0.25 |
| DS0c | 0.152 | -0.305 |
| GP01 | -0.179 | 0.712 |
| GP02 | -0.462 | -1.22 |
| GP0c | 0.091 | -1.345 |
| NOD | -0.698 | 0.913 |
| NZO | -0.14 | -0.267 |
| PWK | -0.355 | -2.391 |
| H37Rv_KO_CtpC | -0.938 | -1.322 |
| H37Rv_KO_CtpD | -0.262 | 0.773 |
| H37Rv_KO_Rv1272 | -1.167 | -3.687 |
| H37Rv_KO_SugABC | 0.263 | 1.172 |
| H37Rv_KO_MbtN | 0.69 | -2.44 |
| Trans05 | 0.092 | -1.2 |
| macrophage_unactivated | -0.142 | -2.288 |
| IL1 | 0.021 | 0.756 |
| Rapamycin | 0.046 | -0.258 |
| Tcell | 0.094 | 0.257 |
| GMCSF | 0.04 | 0.874 |
| IFNab | 0.218 | 1.324 |
| IFNg | -0.182 | -1.026 |
| IFNg_GMCSF1 | -0.069 | 1.213 |
| Rv1432_day32 | 0.0 | -0.18 |
| Rv1565c_day32 | -0.204 | 1.06 |
| secA2_input | -0.127 | 0.352 |
| delta_Rv3594 | -0.098 | 0.0 |
| delta_Rv3717 | -0.278 | 0.425 |
| delta_Rv3811 | -0.067 | 0.446 |
| delta_Rv0954 | 0.402 | 0.249 |
| PonA1 | 0.774 | 0.19 |
| EccD1_KO | -1.135 | -1.033 |
| EspI_KO | -0.151 | -0.61 |
| PE35_KO | 0.172 | -0.449 |
| PPE68_KO | -0.074 | -0.384 |
| glycerol2 | 0.439 | -0.441 |
| lignocerate | -0.226 | -1.031 |
| oleate | 0.503 | 0.571 |
| phosphatidylcholine | 0.083 | -0.651 |
| acetate | -0.708 | -1.428 |
| glucAc | -1.013 | -3.777 |
| Rv0950ko | 0.32 | -1.951 |
| Rv1096ko | 0.344 | 1.095 |
| Rv3684ko | 0.999 | 0.701 |
| delta_otsA_trehalose | -0.596 | 0.372 |