Top 10 genes with highest correlation to Rv0029/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3209/- | (cc=0.4094) | info on Rv3209/- |
| Rv0022c/whiB5 | (cc=0.3829) | info on Rv0022c/whiB5 |
| Rv2946c/pks1 | (cc=0.3783) | info on Rv2946c/pks1 |
| Rv0320/- | (cc=0.3756) | info on Rv0320/- |
| Rv1235/lpqY | (cc=0.3731) | info on Rv1235/lpqY |
| Rv0117/oxyS | (cc=0.3724) | info on Rv0117/oxyS |
| Rv3444c/esxT | (cc=0.3585) | info on Rv3444c/esxT |
| Rv3445c/esxU | (cc=0.3585) | info on Rv3445c/esxU |
| Rv1031/kdpC | (cc=0.3419) | info on Rv1031/kdpC |
| Rv2831/echA16 | (cc=0.3416) | info on Rv2831/echA16 |
Correlation of Rv0029/- with Rv3209/-
Normalized LFCs for Rv0029/-:
(description and provenance of datasets)
| Rv0029/- | Rv3209/- | |
| Fe_supp_jason_reseq | -0.568 | -0.444 |
| low_pH_jason_reseq | -0.346 | -0.664 |
| NO_jason_reseq | -0.181 | -0.234 |
| B6_jason_reseq | 0.142 | -0.27 |
| MHCII_jason_reseq | 0.125 | -0.211 |
| Isoniazid02 | -0.367 | 0.167 |
| Rifampicin4 | -0.536 | -0.338 |
| Ethambutol3 | -0.011 | -0.176 |
| Meropenem3 | -0.289 | 0.29 |
| Vancomycin16 | 0.329 | -0.064 |
| Rv2680_day32 | -1.486 | -0.172 |
| H37Rv_KO_MarP | 0.463 | -0.825 |
| hypoxia_3wks | 0.478 | 0.762 |
| hypoxia_6wks | 0.595 | 0.812 |
| glycerol | -1.197 | -0.08 |
| cholesterol | 1.245 | 0.425 |
| AJ | 0.4 | 0.255 |
| Bibs02 | 0.335 | -0.711 |
| Bibs02c | -0.39 | 0.238 |
| BL6 | -0.486 | -0.449 |
| BL6a | -0.56 | -0.558 |
| BXD01 | -0.172 | -0.038 |
| BXD010 | -0.2 | -1.48 |
| BXD011 | 0.0 | -0.093 |
| BXD03 | 0.314 | -0.419 |
| BXD04 | 0.649 | 0.541 |
| BXD05 | -0.403 | -0.716 |
| BXD06 | -0.384 | -0.603 |
| BXD07 | -0.884 | -0.76 |
| BXD08 | -0.476 | -0.24 |
| BXD09 | -0.365 | -0.849 |
| CAST | -0.637 | 0.112 |
| CCcont | -0.58 | -0.651 |
| DS01 | 0.099 | 0.017 |
| DS02 | 0.271 | -0.159 |
| DS04 | -0.371 | -0.668 |
| DS0c | 0.152 | 0.636 |
| GP01 | -0.179 | 0.239 |
| GP02 | -0.462 | 1.433 |
| GP0c | 0.091 | 0.204 |
| NOD | -0.698 | 0.024 |
| NZO | -0.14 | 0.246 |
| PWK | -0.355 | 0.166 |
| H37Rv_KO_CtpC | -0.938 | -1.177 |
| H37Rv_KO_CtpD | -0.262 | -0.436 |
| H37Rv_KO_Rv1272 | -1.167 | -0.677 |
| H37Rv_KO_SugABC | 0.263 | 0.917 |
| H37Rv_KO_MbtN | 0.69 | 0.715 |
| Trans05 | 0.092 | 0.408 |
| macrophage_unactivated | -0.142 | -0.817 |
| IL1 | 0.021 | -0.418 |
| Rapamycin | 0.046 | -0.574 |
| Tcell | 0.094 | 0.6 |
| GMCSF | 0.04 | -0.525 |
| IFNab | 0.218 | -0.859 |
| IFNg | -0.182 | -0.377 |
| IFNg_GMCSF1 | -0.069 | -0.267 |
| Rv1432_day32 | 0.0 | 0.207 |
| Rv1565c_day32 | -0.204 | 0.396 |
| secA2_input | -0.127 | 0.05 |
| delta_Rv3594 | -0.098 | 0.667 |
| delta_Rv3717 | -0.278 | 0.857 |
| delta_Rv3811 | -0.067 | 0.504 |
| delta_Rv0954 | 0.402 | 0.963 |
| PonA1 | 0.774 | 1.249 |
| EccD1_KO | -1.135 | -0.158 |
| EspI_KO | -0.151 | 0.374 |
| PE35_KO | 0.172 | -0.537 |
| PPE68_KO | -0.074 | -0.077 |
| glycerol2 | 0.439 | 0.277 |
| lignocerate | -0.226 | 0.112 |
| oleate | 0.503 | 0.224 |
| phosphatidylcholine | 0.083 | 0.214 |
| acetate | -0.708 | -0.037 |
| glucAc | -1.013 | -0.47 |
| Rv0950ko | 0.32 | 0.193 |
| Rv1096ko | 0.344 | -0.202 |
| Rv3684ko | 0.999 | 0.472 |
| delta_otsA_trehalose | -0.596 | -1.447 |