Top 10 genes with highest correlation to Rv3923c/rnpA:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3193c/- | (cc=0.7337) | info on Rv3193c/- |
| Rv2169c/- | (cc=0.7144) | info on Rv2169c/- |
| Rv2535c/pepQ | (cc=0.6465) | info on Rv2535c/pepQ |
| Rv3455c/truA | (cc=0.6443) | info on Rv3455c/truA |
| Rv2470/glbO | (cc=0.5759) | info on Rv2470/glbO |
| Rv0003/recF | (cc=0.5683) | info on Rv0003/recF |
| Rv1010/ksgA | (cc=0.5675) | info on Rv1010/ksgA |
| Rv2737c/recA | (cc=0.5399) | info on Rv2737c/recA |
| Rv0067c/- | (cc=0.5295) | info on Rv0067c/- |
| Rv1432/- | (cc=0.5187) | info on Rv1432/- |
Correlation of Rv3923c/rnpA with Rv2470/glbO
Normalized LFCs for Rv3923c/rnpA:
(description and provenance of datasets)
| Rv3923c/rnpA | Rv2470/glbO | |
| Fe_supp_jason_reseq | 1.579 | 0.0 |
| low_pH_jason_reseq | 0.634 | 0.44 |
| NO_jason_reseq | 0.0 | 0.0 |
| B6_jason_reseq | 0.0 | 0.0 |
| MHCII_jason_reseq | 0.0 | 0.0 |
| Isoniazid02 | -0.146 | 1.455 |
| Rifampicin4 | -1.21 | 0.271 |
| Ethambutol3 | -0.251 | 0.122 |
| Meropenem3 | 0.315 | 0.528 |
| Vancomycin16 | -1.186 | 0.265 |
| Rv2680_day32 | 0.0 | 0.0 |
| H37Rv_KO_MarP | -0.116 | -0.586 |
| hypoxia_3wks | 0.459 | 0.0 |
| hypoxia_6wks | -0.549 | 0.0 |
| glycerol | -0.654 | 0.709 |
| cholesterol | -0.105 | 0.509 |
| AJ | 0.0 | 0.232 |
| Bibs02 | -0.592 | 0.0 |
| Bibs02c | -0.677 | 0.887 |
| BL6 | -0.53 | 0.0 |
| BL6a | -0.462 | 0.696 |
| BXD01 | -0.304 | 0.0 |
| BXD010 | -0.543 | 0.0 |
| BXD011 | -0.54 | 0.243 |
| BXD03 | -0.573 | 0.258 |
| BXD04 | -0.4 | 0.124 |
| BXD05 | -0.436 | 0.135 |
| BXD06 | -0.566 | 0.133 |
| BXD07 | -0.448 | 0.0 |
| BXD08 | -0.31 | 0.133 |
| BXD09 | -0.596 | 0.0 |
| CAST | -0.537 | 0.23 |
| CCcont | 0.733 | 1.3 |
| DS01 | 1.16 | 0.0 |
| DS02 | -0.922 | 0.0 |
| DS04 | -0.453 | 0.0 |
| DS0c | -0.157 | 0.596 |
| GP01 | -0.418 | 0.0 |
| GP02 | -0.353 | 0.0 |
| GP0c | -0.551 | 0.0 |
| NOD | 0.675 | 1.103 |
| NZO | -0.646 | 0.548 |
| PWK | -0.635 | 0.539 |
| H37Rv_KO_CtpC | -0.688 | 0.0 |
| H37Rv_KO_CtpD | -0.537 | 0.127 |
| H37Rv_KO_Rv1272 | -0.457 | 0.141 |
| H37Rv_KO_SugABC | -0.42 | 0.099 |
| H37Rv_KO_MbtN | 0.31 | 0.0 |
| Trans05 | -0.095 | 0.0 |
| macrophage_unactivated | 0.0 | 0.0 |
| IL1 | -0.409 | 0.0 |
| Rapamycin | -0.424 | 0.0 |
| Tcell | -0.45 | 0.0 |
| GMCSF | -0.364 | 0.0 |
| IFNab | 0.0 | 0.0 |
| IFNg | -0.369 | 0.0 |
| IFNg_GMCSF1 | 0.0 | 0.0 |
| Rv1432_day32 | 0.0 | 0.0 |
| Rv1565c_day32 | 0.0 | 0.599 |
| secA2_input | -1.327 | -0.357 |
| delta_Rv3594 | 0.402 | 0.402 |
| delta_Rv3717 | -0.736 | 0.0 |
| delta_Rv3811 | -0.306 | 0.0 |
| delta_Rv0954 | -1.172 | 1.553 |
| PonA1 | -1.67 | 1.154 |
| EccD1_KO | 1.559 | 1.194 |
| EspI_KO | 0.433 | 2.219 |
| PE35_KO | 0.648 | 2.917 |
| PPE68_KO | 2.038 | 3.52 |
| glycerol2 | -2.322 | -0.82 |
| lignocerate | -2.479 | -1.425 |
| oleate | -2.691 | -1.659 |
| phosphatidylcholine | -2.851 | -2.007 |
| acetate | 0.17 | -0.09 |
| glucAc | 0.41 | 0.157 |
| Rv0950ko | -1.764 | -0.715 |
| Rv1096ko | -1.016 | -2.177 |
| Rv3684ko | 0.0 | -0.609 |
| delta_otsA_trehalose | -0.329 | 1.751 |