Top 10 genes with highest correlation to Rv3923c/rnpA:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3193c/- | (cc=0.7337) | info on Rv3193c/- |
| Rv2169c/- | (cc=0.7144) | info on Rv2169c/- |
| Rv2535c/pepQ | (cc=0.6465) | info on Rv2535c/pepQ |
| Rv3455c/truA | (cc=0.6443) | info on Rv3455c/truA |
| Rv2470/glbO | (cc=0.5759) | info on Rv2470/glbO |
| Rv0003/recF | (cc=0.5683) | info on Rv0003/recF |
| Rv1010/ksgA | (cc=0.5675) | info on Rv1010/ksgA |
| Rv2737c/recA | (cc=0.5399) | info on Rv2737c/recA |
| Rv0067c/- | (cc=0.5295) | info on Rv0067c/- |
| Rv1432/- | (cc=0.5187) | info on Rv1432/- |
Correlation of Rv3923c/rnpA with Rv0003/recF
Normalized LFCs for Rv3923c/rnpA:
(description and provenance of datasets)
| Rv3923c/rnpA | Rv0003/recF | |
| Fe_supp_jason_reseq | 1.579 | 2.382 |
| low_pH_jason_reseq | 0.634 | 0.0 |
| NO_jason_reseq | 0.0 | 0.281 |
| B6_jason_reseq | 0.0 | 0.333 |
| MHCII_jason_reseq | 0.0 | 0.0 |
| Isoniazid02 | -0.146 | 0.063 |
| Rifampicin4 | -1.21 | -1.086 |
| Ethambutol3 | -0.251 | -0.288 |
| Meropenem3 | 0.315 | -0.624 |
| Vancomycin16 | -1.186 | -0.913 |
| Rv2680_day32 | 0.0 | -0.554 |
| H37Rv_KO_MarP | -0.116 | -0.807 |
| hypoxia_3wks | 0.459 | -1.344 |
| hypoxia_6wks | -0.549 | -1.416 |
| glycerol | -0.654 | 1.24 |
| cholesterol | -0.105 | 1.099 |
| AJ | 0.0 | -0.168 |
| Bibs02 | -0.592 | -0.273 |
| Bibs02c | -0.677 | 0.0 |
| BL6 | -0.53 | 0.084 |
| BL6a | -0.462 | 0.696 |
| BXD01 | -0.304 | 0.322 |
| BXD010 | -0.543 | 0.0 |
| BXD011 | -0.54 | 0.383 |
| BXD03 | -0.573 | 0.475 |
| BXD04 | -0.4 | 0.305 |
| BXD05 | -0.436 | 0.176 |
| BXD06 | -0.566 | 0.469 |
| BXD07 | -0.448 | 0.796 |
| BXD08 | -0.31 | 0.174 |
| BXD09 | -0.596 | 0.494 |
| CAST | -0.537 | -0.344 |
| CCcont | 0.733 | 1.531 |
| DS01 | 1.16 | 0.159 |
| DS02 | -0.922 | 0.147 |
| DS04 | -0.453 | 0.37 |
| DS0c | -0.157 | 0.652 |
| GP01 | -0.418 | 0.68 |
| GP02 | -0.353 | -0.06 |
| GP0c | -0.551 | 1.112 |
| NOD | 0.675 | -0.163 |
| NZO | -0.646 | 0.134 |
| PWK | -0.635 | -0.142 |
| H37Rv_KO_CtpC | -0.688 | 0.401 |
| H37Rv_KO_CtpD | -0.537 | 0.778 |
| H37Rv_KO_Rv1272 | -0.457 | 0.185 |
| H37Rv_KO_SugABC | -0.42 | 1.183 |
| H37Rv_KO_MbtN | 0.31 | 0.069 |
| Trans05 | -0.095 | 0.249 |
| macrophage_unactivated | 0.0 | 0.701 |
| IL1 | -0.409 | -0.78 |
| Rapamycin | -0.424 | -0.807 |
| Tcell | -0.45 | -0.267 |
| GMCSF | -0.364 | 0.0 |
| IFNab | 0.0 | 0.877 |
| IFNg | -0.369 | 0.208 |
| IFNg_GMCSF1 | 0.0 | 0.478 |
| Rv1432_day32 | 0.0 | -1.005 |
| Rv1565c_day32 | 0.0 | -0.362 |
| secA2_input | -1.327 | -0.714 |
| delta_Rv3594 | 0.402 | 0.33 |
| delta_Rv3717 | -0.736 | -0.542 |
| delta_Rv3811 | -0.306 | 0.492 |
| delta_Rv0954 | -1.172 | 0.116 |
| PonA1 | -1.67 | -0.426 |
| EccD1_KO | 1.559 | 1.01 |
| EspI_KO | 0.433 | -0.108 |
| PE35_KO | 0.648 | 1.155 |
| PPE68_KO | 2.038 | 1.078 |
| glycerol2 | -2.322 | -2.152 |
| lignocerate | -2.479 | -2.157 |
| oleate | -2.691 | -2.178 |
| phosphatidylcholine | -2.851 | -2.053 |
| acetate | 0.17 | -0.775 |
| glucAc | 0.41 | -0.554 |
| Rv0950ko | -1.764 | 0.0 |
| Rv1096ko | -1.016 | 0.899 |
| Rv3684ko | 0.0 | 0.377 |
| delta_otsA_trehalose | -0.329 | -0.711 |