Top 10 genes with highest correlation to Rv3923c/rnpA:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3193c/- | (cc=0.7337) | info on Rv3193c/- |
| Rv2169c/- | (cc=0.7144) | info on Rv2169c/- |
| Rv2535c/pepQ | (cc=0.6465) | info on Rv2535c/pepQ |
| Rv3455c/truA | (cc=0.6443) | info on Rv3455c/truA |
| Rv2470/glbO | (cc=0.5759) | info on Rv2470/glbO |
| Rv0003/recF | (cc=0.5683) | info on Rv0003/recF |
| Rv1010/ksgA | (cc=0.5675) | info on Rv1010/ksgA |
| Rv2737c/recA | (cc=0.5399) | info on Rv2737c/recA |
| Rv0067c/- | (cc=0.5295) | info on Rv0067c/- |
| Rv1432/- | (cc=0.5187) | info on Rv1432/- |
Correlation of Rv3923c/rnpA with Rv0067c/-
Normalized LFCs for Rv3923c/rnpA:
(description and provenance of datasets)
| Rv3923c/rnpA | Rv0067c/- | |
| Fe_supp_jason_reseq | 1.579 | 2.993 |
| low_pH_jason_reseq | 0.634 | 0.888 |
| NO_jason_reseq | 0.0 | 0.929 |
| B6_jason_reseq | 0.0 | 2.447 |
| MHCII_jason_reseq | 0.0 | 2.514 |
| Isoniazid02 | -0.146 | -3.569 |
| Rifampicin4 | -1.21 | -0.666 |
| Ethambutol3 | -0.251 | -0.43 |
| Meropenem3 | 0.315 | -2.505 |
| Vancomycin16 | -1.186 | -0.772 |
| Rv2680_day32 | 0.0 | 1.276 |
| H37Rv_KO_MarP | -0.116 | 0.622 |
| hypoxia_3wks | 0.459 | 0.175 |
| hypoxia_6wks | -0.549 | -0.867 |
| glycerol | -0.654 | -0.633 |
| cholesterol | -0.105 | -0.178 |
| AJ | 0.0 | -0.235 |
| Bibs02 | -0.592 | 0.751 |
| Bibs02c | -0.677 | 2.114 |
| BL6 | -0.53 | -1.235 |
| BL6a | -0.462 | 0.653 |
| BXD01 | -0.304 | -0.712 |
| BXD010 | -0.543 | -0.832 |
| BXD011 | -0.54 | -0.185 |
| BXD03 | -0.573 | -1.908 |
| BXD04 | -0.4 | -1.493 |
| BXD05 | -0.436 | -1.028 |
| BXD06 | -0.566 | -0.73 |
| BXD07 | -0.448 | -1.057 |
| BXD08 | -0.31 | -1.07 |
| BXD09 | -0.596 | -0.404 |
| CAST | -0.537 | 0.791 |
| CCcont | 0.733 | 0.289 |
| DS01 | 1.16 | 0.676 |
| DS02 | -0.922 | 0.589 |
| DS04 | -0.453 | 1.058 |
| DS0c | -0.157 | 0.715 |
| GP01 | -0.418 | -1.322 |
| GP02 | -0.353 | -1.383 |
| GP0c | -0.551 | -0.993 |
| NOD | 0.675 | 1.733 |
| NZO | -0.646 | -0.678 |
| PWK | -0.635 | 0.561 |
| H37Rv_KO_CtpC | -0.688 | -0.998 |
| H37Rv_KO_CtpD | -0.537 | -0.823 |
| H37Rv_KO_Rv1272 | -0.457 | -1.54 |
| H37Rv_KO_SugABC | -0.42 | 2.283 |
| H37Rv_KO_MbtN | 0.31 | 1.101 |
| Trans05 | -0.095 | 0.049 |
| macrophage_unactivated | 0.0 | -0.931 |
| IL1 | -0.409 | -2.515 |
| Rapamycin | -0.424 | -1.795 |
| Tcell | -0.45 | -1.906 |
| GMCSF | -0.364 | -0.779 |
| IFNab | 0.0 | -1.769 |
| IFNg | -0.369 | -0.788 |
| IFNg_GMCSF1 | 0.0 | -0.534 |
| Rv1432_day32 | 0.0 | 0.305 |
| Rv1565c_day32 | 0.0 | 0.335 |
| secA2_input | -1.327 | -1.565 |
| delta_Rv3594 | 0.402 | 0.742 |
| delta_Rv3717 | -0.736 | 0.927 |
| delta_Rv3811 | -0.306 | 0.138 |
| delta_Rv0954 | -1.172 | -0.025 |
| PonA1 | -1.67 | 0.529 |
| EccD1_KO | 1.559 | 1.727 |
| EspI_KO | 0.433 | -0.901 |
| PE35_KO | 0.648 | 0.248 |
| PPE68_KO | 2.038 | 1.632 |
| glycerol2 | -2.322 | -3.293 |
| lignocerate | -2.479 | -2.695 |
| oleate | -2.691 | -3.332 |
| phosphatidylcholine | -2.851 | -3.291 |
| acetate | 0.17 | -0.409 |
| glucAc | 0.41 | -0.52 |
| Rv0950ko | -1.764 | 0.362 |
| Rv1096ko | -1.016 | 0.106 |
| Rv3684ko | 0.0 | -0.177 |
| delta_otsA_trehalose | -0.329 | 0.419 |