Top 10 genes with highest correlation to Rv3870/eccCa1:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3883c/mycP1 | (cc=0.9631) | info on Rv3883c/mycP1 |
| Rv3882c/eccE1 | (cc=0.9587) | info on Rv3882c/eccE1 |
| Rv3869/eccB1 | (cc=0.9576) | info on Rv3869/eccB1 |
| Rv3871/eccCb1 | (cc=0.9566) | info on Rv3871/eccCb1 |
| Rv3616c/espA | (cc=0.9233) | info on Rv3616c/espA |
| Rv3614c/espD | (cc=0.9023) | info on Rv3614c/espD |
| Rv3615c/espC | (cc=0.8931) | info on Rv3615c/espC |
| Rv3877/eccD1 | (cc=0.8864) | info on Rv3877/eccD1 |
| Rv3551/- | (cc=0.8713) | info on Rv3551/- |
| Rv1568/bioA | (cc=0.8699) | info on Rv1568/bioA |
Correlation of Rv3870/eccCa1 with Rv3551/-
Normalized LFCs for Rv3870/eccCa1:
(description and provenance of datasets)
| Rv3870/eccCa1 | Rv3551/- | |
| Fe_supp_jason_reseq | -1.088 | 0.737 |
| low_pH_jason_reseq | 0.325 | -0.647 |
| NO_jason_reseq | -0.291 | -0.601 |
| B6_jason_reseq | -2.875 | -1.96 |
| MHCII_jason_reseq | -3.014 | -1.726 |
| Isoniazid02 | -0.306 | -0.842 |
| Rifampicin4 | -0.888 | -0.165 |
| Ethambutol3 | -0.131 | -1.515 |
| Meropenem3 | 0.261 | 0.734 |
| Vancomycin16 | -0.215 | -1.008 |
| Rv2680_day32 | -1.924 | -1.788 |
| H37Rv_KO_MarP | 1.534 | 0.246 |
| hypoxia_3wks | -0.152 | 0.08 |
| hypoxia_6wks | 0.142 | -0.693 |
| glycerol | -0.78 | 1.148 |
| cholesterol | -0.197 | -3.657 |
| AJ | -5.284 | -5.857 |
| Bibs02 | -5.766 | -4.616 |
| Bibs02c | -4.15 | -5.282 |
| BL6 | -1.616 | -2.92 |
| BL6a | -4.402 | -5.001 |
| BXD01 | -3.251 | -3.288 |
| BXD010 | -2.846 | -2.306 |
| BXD011 | -2.901 | -2.59 |
| BXD03 | -2.571 | -3.28 |
| BXD04 | -2.748 | -2.999 |
| BXD05 | -2.789 | -3.029 |
| BXD06 | -3.586 | -3.37 |
| BXD07 | -2.661 | -3.496 |
| BXD08 | -3.816 | -3.226 |
| BXD09 | -3.836 | -3.408 |
| CAST | -4.883 | -4.838 |
| CCcont | -0.407 | -0.733 |
| DS01 | -4.356 | -5.963 |
| DS02 | -4.052 | -5.49 |
| DS04 | -2.155 | -4.367 |
| DS0c | -4.302 | -5.476 |
| GP01 | -2.367 | -2.304 |
| GP02 | -2.347 | -1.942 |
| GP0c | -0.842 | -1.016 |
| NOD | -1.925 | -1.847 |
| NZO | -5.444 | -4.838 |
| PWK | -5.533 | -4.757 |
| H37Rv_KO_CtpC | -1.66 | -3.94 |
| H37Rv_KO_CtpD | -1.651 | -2.576 |
| H37Rv_KO_Rv1272 | -1.806 | -3.56 |
| H37Rv_KO_SugABC | -0.647 | -1.783 |
| H37Rv_KO_MbtN | 0.049 | -1.855 |
| Trans05 | -1.38 | -3.299 |
| macrophage_unactivated | -0.262 | 0.66 |
| IL1 | -0.246 | -1.605 |
| Rapamycin | -0.288 | -1.093 |
| Tcell | -1.541 | -2.209 |
| GMCSF | 0.681 | 0.752 |
| IFNab | 1.859 | 2.283 |
| IFNg | -1.497 | -0.249 |
| IFNg_GMCSF1 | -1.313 | -0.606 |
| Rv1432_day32 | -2.52 | -3.863 |
| Rv1565c_day32 | -2.663 | -3.884 |
| secA2_input | 0.036 | -0.54 |
| delta_Rv3594 | 0.106 | -0.26 |
| delta_Rv3717 | -0.101 | 0.191 |
| delta_Rv3811 | -0.233 | 0.556 |
| delta_Rv0954 | 0.379 | 1.149 |
| PonA1 | 0.384 | 0.384 |
| EccD1_KO | 0.342 | 1.246 |
| EspI_KO | 0.633 | 0.539 |
| PE35_KO | 0.257 | 1.105 |
| PPE68_KO | 0.214 | 1.139 |
| glycerol2 | 0.423 | 0.289 |
| lignocerate | 0.792 | 0.785 |
| oleate | -0.193 | -0.537 |
| phosphatidylcholine | 0.531 | -0.106 |
| acetate | 0.095 | 2.234 |
| glucAc | 0.366 | 1.052 |
| Rv0950ko | 0.356 | 1.903 |
| Rv1096ko | -0.229 | 0.329 |
| Rv3684ko | 0.37 | 0.092 |
| delta_otsA_trehalose | -0.994 | 0.325 |