TnSeqCorr

Top 10 genes with highest correlation to Rv3736/-:

update plotcorrelationlink to info on gene
Rv3056/dinP (cc=0.5495) info on Rv3056/dinP
Rv2490c/PE_PGRS43 (cc=0.5169) info on Rv2490c/PE_PGRS43
Rv1706c/PPE23 (cc=0.5101) info on Rv1706c/PPE23
Rv0834c/PE_PGRS14 (cc=0.495) info on Rv0834c/PE_PGRS14
Rv3289c/- (cc=0.4906) info on Rv3289c/-
Rv2159c/- (cc=0.4808) info on Rv2159c/-
Rv2590/fadD9 (cc=0.4779) info on Rv2590/fadD9
Rv2062c/cobN (cc=0.4725) info on Rv2062c/cobN
Rv3448/eccD4 (cc=0.4712) info on Rv3448/eccD4
Rv3026c/- (cc=0.467) info on Rv3026c/-

Correlation of Rv3736/- with Rv2590/fadD9

Normalized LFCs for Rv3736/-:
(description and provenance of datasets)
Rv3736/-Rv2590/fadD9
Fe_supp_jason_reseq

-1.176

-0.251

low_pH_jason_reseq

-0.206

-1.092

NO_jason_reseq

-0.31

-0.344

B6_jason_reseq

-0.605

-0.253

MHCII_jason_reseq

-0.367

-0.336

Isoniazid02

-0.068

0.586

Rifampicin4

0.108

0.217

Ethambutol3

0.338

0.643

Meropenem3

0.345

0.516

Vancomycin16

-0.109

0.013

Rv2680_day32

-0.095

0.1

H37Rv_KO_MarP

0.214

0.096

hypoxia_3wks

-0.506

0.263

hypoxia_6wks

-0.338

0.228

glycerol

0.265

0.034

cholesterol

-0.11

0.205

AJ

1.049

0.151

Bibs02

0.077

0.007

Bibs02c

0.171

-0.168

BL6

-0.06

-0.06

BL6a

-0.253

-0.089

BXD01

-0.45

0.076

BXD010

-0.305

0.181

BXD011

-0.475

0.198

BXD03

-0.474

0.084

BXD04

-0.461

-0.004

BXD05

-0.053

-0.069

BXD06

-0.236

0.048

BXD07

-0.245

0.335

BXD08

-0.141

-0.078

BXD09

-0.434

0.211

CAST

-0.167

-0.063

CCcont

-0.54

-0.547

DS01

-0.084

0.048

DS02

-0.435

0.058

DS04

0.555

0.101

DS0c

0.217

0.182

GP01

-0.221

0.262

GP02

0.269

0.212

GP0c

0.156

-0.081

NOD

-0.612

-0.023

NZO

0.247

0.299

PWK

-0.117

0.065

H37Rv_KO_CtpC

-0.265

-0.045

H37Rv_KO_CtpD

-0.029

0.414

H37Rv_KO_Rv1272

-0.541

0.28

H37Rv_KO_SugABC

0.567

0.571

H37Rv_KO_MbtN

-0.473

0.293

Trans05

-0.382

0.185

macrophage_unactivated

0.047

0.42

IL1

-0.439

0.653

Rapamycin

0.021

0.663

Tcell

-0.222

-0.075

GMCSF

-0.499

0.462

IFNab

0.175

0.565

IFNg

-0.575

0.265

IFNg_GMCSF1

-0.239

0.145

Rv1432_day32

0.518

0.389

Rv1565c_day32

-0.073

-0.34

secA2_input

-0.106

0.063

delta_Rv3594

-0.194

0.35

delta_Rv3717

0.092

0.266

delta_Rv3811

0.126

-0.065

delta_Rv0954

0.043

0.096

PonA1

0.306

0.328

EccD1_KO

1.006

0.263

EspI_KO

0.436

0.759

PE35_KO

0.21

-0.096

PPE68_KO

0.25

-0.019

glycerol2

0.509

0.639

lignocerate

0.217

0.566

oleate

0.594

0.929

phosphatidylcholine

0.979

0.831

acetate

-0.451

-0.165

glucAc

-0.25

-0.27

Rv0950ko

0.684

0.329

Rv1096ko

0.645

0.428

Rv3684ko

0.616

0.396

delta_otsA_trehalose

-1.076

-0.627