Top 10 genes with highest correlation to Rv3723/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0199/- | (cc=0.8647) | info on Rv0199/- |
| Rv0655/mkl | (cc=0.8516) | info on Rv0655/mkl |
| Rv0200/- | (cc=0.7693) | info on Rv0200/- |
| Rv3882c/eccE1 | (cc=0.7584) | info on Rv3882c/eccE1 |
| Rv3871/eccCb1 | (cc=0.7488) | info on Rv3871/eccCb1 |
| Rv3870/eccCa1 | (cc=0.7461) | info on Rv3870/eccCa1 |
| Rv3615c/espC | (cc=0.7435) | info on Rv3615c/espC |
| Rv3869/eccB1 | (cc=0.7393) | info on Rv3869/eccB1 |
| Rv3883c/mycP1 | (cc=0.7366) | info on Rv3883c/mycP1 |
| Rv3496c/mce4D | (cc=0.7258) | info on Rv3496c/mce4D |
Correlation of Rv3723/- with Rv0199/-
Normalized LFCs for Rv3723/-:
(description and provenance of datasets)
| Rv3723/- | Rv0199/- | |
| Fe_supp_jason_reseq | 0.095 | 0.841 |
| low_pH_jason_reseq | 0.552 | 0.723 |
| NO_jason_reseq | 3.069 | 1.762 |
| B6_jason_reseq | -1.244 | -1.774 |
| MHCII_jason_reseq | -3.307 | -2.46 |
| Isoniazid02 | 0.681 | -0.226 |
| Rifampicin4 | 2.115 | 1.449 |
| Ethambutol3 | 1.358 | -0.641 |
| Meropenem3 | 0.848 | 1.031 |
| Vancomycin16 | 2.141 | 1.828 |
| Rv2680_day32 | -1.465 | -3.021 |
| H37Rv_KO_MarP | 0.988 | 1.243 |
| hypoxia_3wks | 2.357 | 2.528 |
| hypoxia_6wks | 2.307 | 2.99 |
| glycerol | -1.211 | -0.607 |
| cholesterol | -1.176 | -1.345 |
| AJ | -4.488 | -4.548 |
| Bibs02 | -2.942 | -4.036 |
| Bibs02c | -3.569 | -5.106 |
| BL6 | -1.308 | -0.391 |
| BL6a | -2.581 | -2.937 |
| BXD01 | -1.279 | -1.034 |
| BXD010 | -1.549 | -0.765 |
| BXD011 | -0.563 | -0.234 |
| BXD03 | -1.11 | -0.87 |
| BXD04 | -1.306 | -1.369 |
| BXD05 | -1.336 | -0.804 |
| BXD06 | -1.897 | -0.88 |
| BXD07 | -1.212 | 0.112 |
| BXD08 | -1.151 | -0.525 |
| BXD09 | -1.812 | -1.066 |
| CAST | -3.001 | -2.785 |
| CCcont | -0.455 | -0.275 |
| DS01 | -3.213 | -3.673 |
| DS02 | -2.445 | -0.832 |
| DS04 | -2.45 | -1.13 |
| DS0c | -2.49 | -2.681 |
| GP01 | -1.287 | -2.179 |
| GP02 | -1.403 | -2.107 |
| GP0c | -0.214 | -0.279 |
| NOD | 0.239 | -1.783 |
| NZO | -4.017 | -2.823 |
| PWK | -3.794 | -3.125 |
| H37Rv_KO_CtpC | -1.68 | -2.861 |
| H37Rv_KO_CtpD | -1.206 | -0.738 |
| H37Rv_KO_Rv1272 | -0.759 | 0.533 |
| H37Rv_KO_SugABC | 1.375 | 0.836 |
| H37Rv_KO_MbtN | 0.178 | -0.035 |
| Trans05 | -0.643 | -1.893 |
| macrophage_unactivated | -1.616 | -1.815 |
| IL1 | 1.762 | 2.073 |
| Rapamycin | 1.053 | 0.724 |
| Tcell | -1.522 | -1.733 |
| GMCSF | -0.465 | -0.106 |
| IFNab | -1.599 | -0.964 |
| IFNg | 0.184 | -0.446 |
| IFNg_GMCSF1 | -1.043 | -0.776 |
| Rv1432_day32 | -1.747 | -3.95 |
| Rv1565c_day32 | -3.15 | -3.657 |
| secA2_input | 0.642 | 0.255 |
| delta_Rv3594 | -0.366 | 0.015 |
| delta_Rv3717 | 0.01 | 0.327 |
| delta_Rv3811 | -0.369 | -0.348 |
| delta_Rv0954 | 0.302 | -0.363 |
| PonA1 | -0.467 | 0.679 |
| EccD1_KO | 0.243 | 0.204 |
| EspI_KO | 0.488 | 0.528 |
| PE35_KO | -0.604 | -0.566 |
| PPE68_KO | -0.013 | 0.0 |
| glycerol2 | -1.289 | -1.454 |
| lignocerate | -0.939 | -2.435 |
| oleate | 0.634 | 0.252 |
| phosphatidylcholine | -0.832 | -1.454 |
| acetate | 0.698 | -0.376 |
| glucAc | 0.315 | -0.256 |
| Rv0950ko | 0.455 | -0.368 |
| Rv1096ko | 0.039 | 0.051 |
| Rv3684ko | -0.072 | -0.773 |
| delta_otsA_trehalose | -1.01 | 0.23 |