Top 10 genes with highest correlation to Rv3717/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0994/moeA1 | (cc=0.7731) | info on Rv0994/moeA1 |
| Rv3005c/- | (cc=0.7057) | info on Rv3005c/- |
| Rv0436c/pssA | (cc=0.6912) | info on Rv0436c/pssA |
| Rv2525c/- | (cc=0.6795) | info on Rv2525c/- |
| Rv1698/mctB | (cc=0.6707) | info on Rv1698/mctB |
| Rv1220c/- | (cc=0.6629) | info on Rv1220c/- |
| Rv0437c/psd | (cc=0.6433) | info on Rv0437c/psd |
| Rv2051c/ppm1 | (cc=0.5933) | info on Rv2051c/ppm1 |
| Rv3139/fadE24 | (cc=0.5882) | info on Rv3139/fadE24 |
| Rv1006/- | (cc=0.5615) | info on Rv1006/- |
Correlation of Rv3717/- with Rv1698/mctB
Normalized LFCs for Rv3717/-:
(description and provenance of datasets)
| Rv3717/- | Rv1698/mctB | |
| Fe_supp_jason_reseq | -0.519 | -0.325 |
| low_pH_jason_reseq | -1.932 | -2.212 |
| NO_jason_reseq | -0.281 | -1.935 |
| B6_jason_reseq | -2.804 | -1.606 |
| MHCII_jason_reseq | -1.818 | -0.8 |
| Isoniazid02 | 1.168 | 1.136 |
| Rifampicin4 | -6.0 | -4.172 |
| Ethambutol3 | -0.287 | -0.365 |
| Meropenem3 | -2.356 | -1.557 |
| Vancomycin16 | -6.0 | -3.449 |
| Rv2680_day32 | -3.189 | -0.512 |
| H37Rv_KO_MarP | -0.351 | -0.43 |
| hypoxia_3wks | -3.194 | -1.156 |
| hypoxia_6wks | -2.443 | -2.497 |
| glycerol | -0.56 | 0.0 |
| cholesterol | 0.614 | 1.784 |
| AJ | -1.849 | -0.393 |
| Bibs02 | 1.507 | 0.574 |
| Bibs02c | -0.781 | -1.117 |
| BL6 | -0.497 | -0.467 |
| BL6a | -0.891 | -1.058 |
| BXD01 | -1.981 | -0.695 |
| BXD010 | -1.612 | -0.684 |
| BXD011 | -0.923 | 0.127 |
| BXD03 | -0.573 | -0.407 |
| BXD04 | -1.032 | 0.0 |
| BXD05 | -1.072 | -0.605 |
| BXD06 | -1.114 | -0.226 |
| BXD07 | -1.451 | -0.323 |
| BXD08 | -1.527 | 0.0 |
| BXD09 | -1.346 | -0.155 |
| CAST | -3.68 | -0.537 |
| CCcont | 1.67 | 1.3 |
| DS01 | 1.732 | 0.45 |
| DS02 | 1.068 | 0.11 |
| DS04 | -0.822 | -1.211 |
| DS0c | 0.79 | 0.762 |
| GP01 | -0.617 | 0.966 |
| GP02 | -1.33 | 0.743 |
| GP0c | -1.136 | 1.161 |
| NOD | -2.579 | -1.01 |
| NZO | -1.743 | -1.246 |
| PWK | -2.585 | -1.047 |
| H37Rv_KO_CtpC | 0.85 | 1.045 |
| H37Rv_KO_CtpD | 0.085 | -0.215 |
| H37Rv_KO_Rv1272 | -1.548 | -0.634 |
| H37Rv_KO_SugABC | -0.906 | -0.619 |
| H37Rv_KO_MbtN | -0.783 | 0.0 |
| Trans05 | -1.141 | 0.459 |
| macrophage_unactivated | -0.104 | 1.31 |
| IL1 | -0.685 | -0.955 |
| Rapamycin | 0.822 | 0.807 |
| Tcell | -0.753 | 0.0 |
| GMCSF | 0.636 | -0.401 |
| IFNab | 1.013 | 0.417 |
| IFNg | -1.109 | 0.369 |
| IFNg_GMCSF1 | -2.049 | 0.148 |
| Rv1432_day32 | -2.854 | -1.358 |
| Rv1565c_day32 | -1.515 | -0.809 |
| secA2_input | 1.677 | 0.64 |
| delta_Rv3594 | 0.456 | -0.577 |
| delta_Rv3717 | -3.861 | -0.904 |
| delta_Rv3811 | 0.378 | -0.842 |
| delta_Rv0954 | -0.142 | -1.101 |
| PonA1 | 1.084 | -1.066 |
| EccD1_KO | -0.355 | -0.286 |
| EspI_KO | -0.308 | -1.435 |
| PE35_KO | -0.026 | 0.394 |
| PPE68_KO | -0.227 | -0.093 |
| glycerol2 | -0.437 | 0.52 |
| lignocerate | -0.207 | -1.101 |
| oleate | -1.418 | -1.154 |
| phosphatidylcholine | -1.188 | -0.653 |
| acetate | 0.74 | 0.042 |
| glucAc | 0.429 | -0.934 |
| Rv0950ko | -0.175 | 0.669 |
| Rv1096ko | 0.947 | 0.929 |
| Rv3684ko | 0.029 | -0.727 |
| delta_otsA_trehalose | -0.101 | 0.232 |