Top 10 genes with highest correlation to Rv3717/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0994/moeA1 | (cc=0.7731) | info on Rv0994/moeA1 |
| Rv3005c/- | (cc=0.7057) | info on Rv3005c/- |
| Rv0436c/pssA | (cc=0.6912) | info on Rv0436c/pssA |
| Rv2525c/- | (cc=0.6795) | info on Rv2525c/- |
| Rv1698/mctB | (cc=0.6707) | info on Rv1698/mctB |
| Rv1220c/- | (cc=0.6629) | info on Rv1220c/- |
| Rv0437c/psd | (cc=0.6433) | info on Rv0437c/psd |
| Rv2051c/ppm1 | (cc=0.5933) | info on Rv2051c/ppm1 |
| Rv3139/fadE24 | (cc=0.5882) | info on Rv3139/fadE24 |
| Rv1006/- | (cc=0.5615) | info on Rv1006/- |
Correlation of Rv3717/- with Rv0436c/pssA
Normalized LFCs for Rv3717/-:
(description and provenance of datasets)
| Rv3717/- | Rv0436c/pssA | |
| Fe_supp_jason_reseq | -0.519 | 1.339 |
| low_pH_jason_reseq | -1.932 | 0.0 |
| NO_jason_reseq | -0.281 | 0.0 |
| B6_jason_reseq | -2.804 | 0.0 |
| MHCII_jason_reseq | -1.818 | 0.135 |
| Isoniazid02 | 1.168 | 0.522 |
| Rifampicin4 | -6.0 | -3.254 |
| Ethambutol3 | -0.287 | -0.935 |
| Meropenem3 | -2.356 | -2.184 |
| Vancomycin16 | -6.0 | -5.144 |
| Rv2680_day32 | -3.189 | -1.066 |
| H37Rv_KO_MarP | -0.351 | -1.954 |
| hypoxia_3wks | -3.194 | -1.87 |
| hypoxia_6wks | -2.443 | -1.771 |
| glycerol | -0.56 | -0.41 |
| cholesterol | 0.614 | 0.39 |
| AJ | -1.849 | -1.055 |
| Bibs02 | 1.507 | 1.433 |
| Bibs02c | -0.781 | 1.091 |
| BL6 | -0.497 | -0.694 |
| BL6a | -0.891 | -0.26 |
| BXD01 | -1.981 | -0.593 |
| BXD010 | -1.612 | -0.711 |
| BXD011 | -0.923 | -0.464 |
| BXD03 | -0.573 | -0.75 |
| BXD04 | -1.032 | -0.686 |
| BXD05 | -1.072 | -0.49 |
| BXD06 | -1.114 | -0.741 |
| BXD07 | -1.451 | -0.768 |
| BXD08 | -1.527 | -0.605 |
| BXD09 | -1.346 | -0.639 |
| CAST | -3.68 | -1.048 |
| CCcont | 1.67 | 2.475 |
| DS01 | 1.732 | 1.049 |
| DS02 | 1.068 | -0.61 |
| DS04 | -0.822 | 1.521 |
| DS0c | 0.79 | -0.608 |
| GP01 | -0.617 | -0.548 |
| GP02 | -1.33 | -0.462 |
| GP0c | -1.136 | -0.721 |
| NOD | -2.579 | -0.456 |
| NZO | -1.743 | -0.405 |
| PWK | -2.585 | -0.55 |
| H37Rv_KO_CtpC | 0.85 | 0.785 |
| H37Rv_KO_CtpD | 0.085 | 0.0 |
| H37Rv_KO_Rv1272 | -1.548 | -0.089 |
| H37Rv_KO_SugABC | -0.906 | -0.361 |
| H37Rv_KO_MbtN | -0.783 | -0.135 |
| Trans05 | -1.141 | -0.476 |
| macrophage_unactivated | -0.104 | 1.31 |
| IL1 | -0.685 | 0.78 |
| Rapamycin | 0.822 | 1.274 |
| Tcell | -0.753 | -1.049 |
| GMCSF | 0.636 | 0.9 |
| IFNab | 1.013 | 1.031 |
| IFNg | -1.109 | 1.478 |
| IFNg_GMCSF1 | -2.049 | 1.304 |
| Rv1432_day32 | -2.854 | -0.884 |
| Rv1565c_day32 | -1.515 | 0.992 |
| secA2_input | 1.677 | -0.526 |
| delta_Rv3594 | 0.456 | 0.34 |
| delta_Rv3717 | -3.861 | -1.518 |
| delta_Rv3811 | 0.378 | 0.451 |
| delta_Rv0954 | -0.142 | 1.096 |
| PonA1 | 1.084 | 0.748 |
| EccD1_KO | -0.355 | 0.0 |
| EspI_KO | -0.308 | 0.131 |
| PE35_KO | -0.026 | 1.257 |
| PPE68_KO | -0.227 | 0.95 |
| glycerol2 | -0.437 | 0.193 |
| lignocerate | -0.207 | 0.0 |
| oleate | -1.418 | 0.0 |
| phosphatidylcholine | -1.188 | 0.0 |
| acetate | 0.74 | 0.229 |
| glucAc | 0.429 | 0.143 |
| Rv0950ko | -0.175 | -0.187 |
| Rv1096ko | 0.947 | 0.223 |
| Rv3684ko | 0.029 | 0.0 |
| delta_otsA_trehalose | -0.101 | 0.184 |