Top 10 genes with highest correlation to Rv3717/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0994/moeA1 | (cc=0.7731) | info on Rv0994/moeA1 |
| Rv3005c/- | (cc=0.7057) | info on Rv3005c/- |
| Rv0436c/pssA | (cc=0.6912) | info on Rv0436c/pssA |
| Rv2525c/- | (cc=0.6795) | info on Rv2525c/- |
| Rv1698/mctB | (cc=0.6707) | info on Rv1698/mctB |
| Rv1220c/- | (cc=0.6629) | info on Rv1220c/- |
| Rv0437c/psd | (cc=0.6433) | info on Rv0437c/psd |
| Rv2051c/ppm1 | (cc=0.5933) | info on Rv2051c/ppm1 |
| Rv3139/fadE24 | (cc=0.5882) | info on Rv3139/fadE24 |
| Rv1006/- | (cc=0.5615) | info on Rv1006/- |
Correlation of Rv3717/- with Rv0437c/psd
Normalized LFCs for Rv3717/-:
(description and provenance of datasets)
| Rv3717/- | Rv0437c/psd | |
| Fe_supp_jason_reseq | -0.519 | 0.923 |
| low_pH_jason_reseq | -1.932 | 0.842 |
| NO_jason_reseq | -0.281 | -0.69 |
| B6_jason_reseq | -2.804 | -0.292 |
| MHCII_jason_reseq | -1.818 | -0.123 |
| Isoniazid02 | 1.168 | 1.106 |
| Rifampicin4 | -6.0 | -2.05 |
| Ethambutol3 | -0.287 | -1.327 |
| Meropenem3 | -2.356 | -2.165 |
| Vancomycin16 | -6.0 | -5.385 |
| Rv2680_day32 | -3.189 | -0.359 |
| H37Rv_KO_MarP | -0.351 | -1.926 |
| hypoxia_3wks | -3.194 | -0.885 |
| hypoxia_6wks | -2.443 | -1.013 |
| glycerol | -0.56 | 0.184 |
| cholesterol | 0.614 | 1.049 |
| AJ | -1.849 | 0.0 |
| Bibs02 | 1.507 | 0.0 |
| Bibs02c | -0.781 | 1.613 |
| BL6 | -0.497 | 0.0 |
| BL6a | -0.891 | 0.346 |
| BXD01 | -1.981 | -0.13 |
| BXD010 | -1.612 | -0.128 |
| BXD011 | -0.923 | 0.222 |
| BXD03 | -0.573 | -0.135 |
| BXD04 | -1.032 | -0.124 |
| BXD05 | -1.072 | -0.135 |
| BXD06 | -1.114 | -0.133 |
| BXD07 | -1.451 | -0.138 |
| BXD08 | -1.527 | -0.133 |
| BXD09 | -1.346 | -0.14 |
| CAST | -3.68 | -0.23 |
| CCcont | 1.67 | 2.54 |
| DS01 | 1.732 | 0.926 |
| DS02 | 1.068 | -0.217 |
| DS04 | -0.822 | 0.177 |
| DS0c | 0.79 | 0.0 |
| GP01 | -0.617 | 0.172 |
| GP02 | -1.33 | -0.083 |
| GP0c | -1.136 | 0.0 |
| NOD | -2.579 | -0.225 |
| NZO | -1.743 | -0.199 |
| PWK | -2.585 | -0.196 |
| H37Rv_KO_CtpC | 0.85 | 2.059 |
| H37Rv_KO_CtpD | 0.085 | 0.221 |
| H37Rv_KO_Rv1272 | -1.548 | 0.457 |
| H37Rv_KO_SugABC | -0.906 | 0.0 |
| H37Rv_KO_MbtN | -0.783 | 0.927 |
| Trans05 | -1.141 | -0.131 |
| macrophage_unactivated | -0.104 | -0.363 |
| IL1 | -0.685 | -0.715 |
| Rapamycin | 0.822 | 1.188 |
| Tcell | -0.753 | -1.235 |
| GMCSF | 0.636 | 0.283 |
| IFNab | 1.013 | 0.323 |
| IFNg | -1.109 | -1.013 |
| IFNg_GMCSF1 | -2.049 | -1.191 |
| Rv1432_day32 | -2.854 | -0.884 |
| Rv1565c_day32 | -1.515 | 0.924 |
| secA2_input | 1.677 | 0.371 |
| delta_Rv3594 | 0.456 | 0.506 |
| delta_Rv3717 | -3.861 | -1.723 |
| delta_Rv3811 | 0.378 | 0.134 |
| delta_Rv0954 | -0.142 | 1.647 |
| PonA1 | 1.084 | 0.829 |
| EccD1_KO | -0.355 | 0.855 |
| EspI_KO | -0.308 | 0.79 |
| PE35_KO | -0.026 | 1.482 |
| PPE68_KO | -0.227 | 1.245 |
| glycerol2 | -0.437 | 0.0 |
| lignocerate | -0.207 | 0.0 |
| oleate | -1.418 | 0.0 |
| phosphatidylcholine | -1.188 | 0.0 |
| acetate | 0.74 | 0.0 |
| glucAc | 0.429 | 0.0 |
| Rv0950ko | -0.175 | -0.899 |
| Rv1096ko | 0.947 | 0.546 |
| Rv3684ko | 0.029 | 0.062 |
| delta_otsA_trehalose | -0.101 | 0.04 |