Top 10 genes with highest correlation to Rv3682/ponA2:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0007/- | (cc=0.8839) | info on Rv0007/- |
| Rv2171/lppM | (cc=0.794) | info on Rv2171/lppM |
| Rv2700/- | (cc=0.7939) | info on Rv2700/- |
| Rv2203/- | (cc=0.647) | info on Rv2203/- |
| Rv1006/- | (cc=0.6072) | info on Rv1006/- |
| Rv2363/amiA2 | (cc=0.6002) | info on Rv2363/amiA2 |
| Rv1823/- | (cc=0.5926) | info on Rv1823/- |
| Rv0436c/pssA | (cc=0.5601) | info on Rv0436c/pssA |
| Rv2224c/caeA | (cc=0.5597) | info on Rv2224c/caeA |
| Rv1825/- | (cc=0.5484) | info on Rv1825/- |
Correlation of Rv3682/ponA2 with Rv2363/amiA2
Normalized LFCs for Rv3682/ponA2:
(description and provenance of datasets)
| Rv3682/ponA2 | Rv2363/amiA2 | |
| Fe_supp_jason_reseq | 2.333 | 2.878 |
| low_pH_jason_reseq | 0.862 | -0.634 |
| NO_jason_reseq | 0.735 | -0.633 |
| B6_jason_reseq | -0.246 | -0.421 |
| MHCII_jason_reseq | 0.189 | 1.355 |
| Isoniazid02 | -0.941 | -2.015 |
| Rifampicin4 | -6.0 | -5.334 |
| Ethambutol3 | 0.383 | 0.556 |
| Meropenem3 | -4.704 | -2.857 |
| Vancomycin16 | -6.0 | -3.892 |
| Rv2680_day32 | -1.468 | -0.89 |
| H37Rv_KO_MarP | 2.554 | -3.586 |
| hypoxia_3wks | -3.118 | -0.989 |
| hypoxia_6wks | -2.159 | -1.934 |
| glycerol | 0.054 | 1.138 |
| cholesterol | 0.315 | 1.12 |
| AJ | -1.388 | -0.373 |
| Bibs02 | 0.356 | 1.658 |
| Bibs02c | 0.671 | 2.025 |
| BL6 | -0.809 | 0.119 |
| BL6a | 0.053 | 0.739 |
| BXD01 | -1.496 | -0.136 |
| BXD010 | -1.577 | 0.062 |
| BXD011 | -0.592 | -0.133 |
| BXD03 | -0.875 | -1.048 |
| BXD04 | -1.42 | -0.723 |
| BXD05 | -1.087 | -0.14 |
| BXD06 | -1.533 | -0.669 |
| BXD07 | -1.383 | -0.144 |
| BXD08 | -1.424 | 0.297 |
| BXD09 | -1.614 | -0.31 |
| CAST | -2.644 | -1.155 |
| CCcont | 2.728 | 2.288 |
| DS01 | -1.528 | 0.431 |
| DS02 | -1.301 | 1.226 |
| DS04 | -0.6 | -0.202 |
| DS0c | 1.051 | 1.677 |
| GP01 | 0.527 | 0.26 |
| GP02 | -0.775 | -0.486 |
| GP0c | -0.659 | 0.485 |
| NOD | -1.814 | -0.789 |
| NZO | -1.731 | -0.845 |
| PWK | -2.416 | -1.147 |
| H37Rv_KO_CtpC | 0.703 | 1.007 |
| H37Rv_KO_CtpD | -0.392 | 0.819 |
| H37Rv_KO_Rv1272 | -1.409 | 0.134 |
| H37Rv_KO_SugABC | 0.769 | 0.918 |
| H37Rv_KO_MbtN | 0.201 | 0.61 |
| Trans05 | -0.782 | 0.698 |
| macrophage_unactivated | 1.016 | 2.468 |
| IL1 | -0.572 | -0.356 |
| Rapamycin | 0.353 | 0.0 |
| Tcell | -1.098 | -1.29 |
| GMCSF | -0.161 | -0.156 |
| IFNab | 0.973 | 1.076 |
| IFNg | -0.901 | -0.861 |
| IFNg_GMCSF1 | -0.396 | 0.349 |
| Rv1432_day32 | -0.763 | -0.13 |
| Rv1565c_day32 | 6.0 | 1.164 |
| secA2_input | 1.645 | -0.178 |
| delta_Rv3594 | 1.034 | 1.465 |
| delta_Rv3717 | -0.876 | 1.31 |
| delta_Rv3811 | 0.193 | 1.487 |
| delta_Rv0954 | 1.442 | 1.2 |
| PonA1 | -4.498 | 0.238 |
| EccD1_KO | -2.434 | -0.592 |
| EspI_KO | -1.891 | 0.553 |
| PE35_KO | -1.006 | 0.793 |
| PPE68_KO | 0.573 | 1.264 |
| glycerol2 | -2.071 | 0.189 |
| lignocerate | -1.006 | 0.856 |
| oleate | -3.116 | 0.116 |
| phosphatidylcholine | -2.3 | -0.253 |
| acetate | 0.595 | 0.924 |
| glucAc | 0.056 | 0.217 |
| Rv0950ko | -0.591 | -3.54 |
| Rv1096ko | -3.553 | -1.858 |
| Rv3684ko | 1.136 | 1.408 |
| delta_otsA_trehalose | -0.184 | 0.648 |