Top 10 genes with highest correlation to Rv3682/ponA2:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0007/- | (cc=0.8839) | info on Rv0007/- |
| Rv2171/lppM | (cc=0.794) | info on Rv2171/lppM |
| Rv2700/- | (cc=0.7939) | info on Rv2700/- |
| Rv2203/- | (cc=0.647) | info on Rv2203/- |
| Rv1006/- | (cc=0.6072) | info on Rv1006/- |
| Rv2363/amiA2 | (cc=0.6002) | info on Rv2363/amiA2 |
| Rv1823/- | (cc=0.5926) | info on Rv1823/- |
| Rv0436c/pssA | (cc=0.5601) | info on Rv0436c/pssA |
| Rv2224c/caeA | (cc=0.5597) | info on Rv2224c/caeA |
| Rv1825/- | (cc=0.5484) | info on Rv1825/- |
Correlation of Rv3682/ponA2 with Rv1006/-
Normalized LFCs for Rv3682/ponA2:
(description and provenance of datasets)
| Rv3682/ponA2 | Rv1006/- | |
| Fe_supp_jason_reseq | 2.333 | 2.892 |
| low_pH_jason_reseq | 0.862 | 0.596 |
| NO_jason_reseq | 0.735 | -0.845 |
| B6_jason_reseq | -0.246 | -0.357 |
| MHCII_jason_reseq | 0.189 | 1.742 |
| Isoniazid02 | -0.941 | 0.071 |
| Rifampicin4 | -6.0 | -5.058 |
| Ethambutol3 | 0.383 | 0.766 |
| Meropenem3 | -4.704 | -1.508 |
| Vancomycin16 | -6.0 | -3.404 |
| Rv2680_day32 | -1.468 | -0.793 |
| H37Rv_KO_MarP | 2.554 | -2.348 |
| hypoxia_3wks | -3.118 | -0.574 |
| hypoxia_6wks | -2.159 | -1.84 |
| glycerol | 0.054 | 1.005 |
| cholesterol | 0.315 | 0.957 |
| AJ | -1.388 | -0.551 |
| Bibs02 | 0.356 | 0.828 |
| Bibs02c | 0.671 | 1.343 |
| BL6 | -0.809 | 0.462 |
| BL6a | 0.053 | 0.943 |
| BXD01 | -1.496 | 0.497 |
| BXD010 | -1.577 | -0.169 |
| BXD011 | -0.592 | -0.093 |
| BXD03 | -0.875 | 0.115 |
| BXD04 | -1.42 | 0.202 |
| BXD05 | -1.087 | -0.233 |
| BXD06 | -1.533 | -0.508 |
| BXD07 | -1.383 | -0.101 |
| BXD08 | -1.424 | 0.135 |
| BXD09 | -1.614 | 0.119 |
| CAST | -2.644 | -1.473 |
| CCcont | 2.728 | 1.936 |
| DS01 | -1.528 | 0.491 |
| DS02 | -1.301 | 0.775 |
| DS04 | -0.6 | 0.197 |
| DS0c | 1.051 | 1.328 |
| GP01 | 0.527 | -0.054 |
| GP02 | -0.775 | -0.712 |
| GP0c | -0.659 | -0.598 |
| NOD | -1.814 | -1.095 |
| NZO | -1.731 | -0.345 |
| PWK | -2.416 | -1.191 |
| H37Rv_KO_CtpC | 0.703 | 1.233 |
| H37Rv_KO_CtpD | -0.392 | 1.748 |
| H37Rv_KO_Rv1272 | -1.409 | 0.273 |
| H37Rv_KO_SugABC | 0.769 | 0.525 |
| H37Rv_KO_MbtN | 0.201 | 0.455 |
| Trans05 | -0.782 | -0.254 |
| macrophage_unactivated | 1.016 | 1.793 |
| IL1 | -0.572 | -0.154 |
| Rapamycin | 0.353 | 1.114 |
| Tcell | -1.098 | 0.166 |
| GMCSF | -0.161 | 0.626 |
| IFNab | 0.973 | 0.444 |
| IFNg | -0.901 | 0.0 |
| IFNg_GMCSF1 | -0.396 | 0.314 |
| Rv1432_day32 | -0.763 | 0.228 |
| Rv1565c_day32 | 6.0 | 0.734 |
| secA2_input | 1.645 | -0.207 |
| delta_Rv3594 | 1.034 | 1.345 |
| delta_Rv3717 | -0.876 | 0.19 |
| delta_Rv3811 | 0.193 | 0.953 |
| delta_Rv0954 | 1.442 | 1.578 |
| PonA1 | -4.498 | 0.646 |
| EccD1_KO | -2.434 | -0.908 |
| EspI_KO | -1.891 | -0.445 |
| PE35_KO | -1.006 | -0.738 |
| PPE68_KO | 0.573 | 0.182 |
| glycerol2 | -2.071 | -0.553 |
| lignocerate | -1.006 | 0.308 |
| oleate | -3.116 | 0.0 |
| phosphatidylcholine | -2.3 | -0.021 |
| acetate | 0.595 | 0.025 |
| glucAc | 0.056 | -0.269 |
| Rv0950ko | -0.591 | -2.439 |
| Rv1096ko | -3.553 | -1.384 |
| Rv3684ko | 1.136 | -0.229 |
| delta_otsA_trehalose | -0.184 | -0.348 |