Top 10 genes with highest correlation to Rv3682/ponA2:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0007/- | (cc=0.8839) | info on Rv0007/- |
| Rv2171/lppM | (cc=0.794) | info on Rv2171/lppM |
| Rv2700/- | (cc=0.7939) | info on Rv2700/- |
| Rv2203/- | (cc=0.647) | info on Rv2203/- |
| Rv1006/- | (cc=0.6072) | info on Rv1006/- |
| Rv2363/amiA2 | (cc=0.6002) | info on Rv2363/amiA2 |
| Rv1823/- | (cc=0.5926) | info on Rv1823/- |
| Rv0436c/pssA | (cc=0.5601) | info on Rv0436c/pssA |
| Rv2224c/caeA | (cc=0.5597) | info on Rv2224c/caeA |
| Rv1825/- | (cc=0.5484) | info on Rv1825/- |
Correlation of Rv3682/ponA2 with Rv1823/-
Normalized LFCs for Rv3682/ponA2:
(description and provenance of datasets)
| Rv3682/ponA2 | Rv1823/- | |
| Fe_supp_jason_reseq | 2.333 | 2.807 |
| low_pH_jason_reseq | 0.862 | 1.302 |
| NO_jason_reseq | 0.735 | -1.273 |
| B6_jason_reseq | -0.246 | 0.723 |
| MHCII_jason_reseq | 0.189 | 0.818 |
| Isoniazid02 | -0.941 | -0.074 |
| Rifampicin4 | -6.0 | -2.989 |
| Ethambutol3 | 0.383 | -1.369 |
| Meropenem3 | -4.704 | -0.63 |
| Vancomycin16 | -6.0 | -4.717 |
| Rv2680_day32 | -1.468 | -2.814 |
| H37Rv_KO_MarP | 2.554 | 5.537 |
| hypoxia_3wks | -3.118 | -1.483 |
| hypoxia_6wks | -2.159 | -2.088 |
| glycerol | 0.054 | 0.056 |
| cholesterol | 0.315 | -0.676 |
| AJ | -1.388 | -1.849 |
| Bibs02 | 0.356 | -0.525 |
| Bibs02c | 0.671 | -1.269 |
| BL6 | -0.809 | -2.291 |
| BL6a | 0.053 | -1.637 |
| BXD01 | -1.496 | -2.743 |
| BXD010 | -1.577 | -2.697 |
| BXD011 | -0.592 | -1.517 |
| BXD03 | -0.875 | -2.848 |
| BXD04 | -1.42 | -2.481 |
| BXD05 | -1.087 | -2.465 |
| BXD06 | -1.533 | -2.811 |
| BXD07 | -1.383 | -2.777 |
| BXD08 | -1.424 | -2.668 |
| BXD09 | -1.614 | -2.959 |
| CAST | -2.644 | -2.459 |
| CCcont | 2.728 | 0.021 |
| DS01 | -1.528 | -3.389 |
| DS02 | -1.301 | -3.121 |
| DS04 | -0.6 | -3.009 |
| DS0c | 1.051 | -1.86 |
| GP01 | 0.527 | -1.808 |
| GP02 | -0.775 | -1.669 |
| GP0c | -0.659 | -0.924 |
| NOD | -1.814 | -2.312 |
| NZO | -1.731 | -3.094 |
| PWK | -2.416 | -3.44 |
| H37Rv_KO_CtpC | 0.703 | 0.067 |
| H37Rv_KO_CtpD | -0.392 | 0.035 |
| H37Rv_KO_Rv1272 | -1.409 | -1.166 |
| H37Rv_KO_SugABC | 0.769 | -1.987 |
| H37Rv_KO_MbtN | 0.201 | -0.952 |
| Trans05 | -0.782 | -1.345 |
| macrophage_unactivated | 1.016 | 0.0 |
| IL1 | -0.572 | -0.243 |
| Rapamycin | 0.353 | 0.239 |
| Tcell | -1.098 | -0.554 |
| GMCSF | -0.161 | -0.694 |
| IFNab | 0.973 | -0.795 |
| IFNg | -0.901 | 0.208 |
| IFNg_GMCSF1 | -0.396 | -0.826 |
| Rv1432_day32 | -0.763 | -1.752 |
| Rv1565c_day32 | 6.0 | 1.047 |
| secA2_input | 1.645 | 1.291 |
| delta_Rv3594 | 1.034 | -0.471 |
| delta_Rv3717 | -0.876 | -2.153 |
| delta_Rv3811 | 0.193 | -1.374 |
| delta_Rv0954 | 1.442 | -1.395 |
| PonA1 | -4.498 | -0.643 |
| EccD1_KO | -2.434 | -3.526 |
| EspI_KO | -1.891 | -2.892 |
| PE35_KO | -1.006 | -0.21 |
| PPE68_KO | 0.573 | -1.344 |
| glycerol2 | -2.071 | -1.665 |
| lignocerate | -1.006 | 0.124 |
| oleate | -3.116 | -2.691 |
| phosphatidylcholine | -2.3 | 0.63 |
| acetate | 0.595 | 2.233 |
| glucAc | 0.056 | 1.894 |
| Rv0950ko | -0.591 | 0.6 |
| Rv1096ko | -3.553 | -2.962 |
| Rv3684ko | 1.136 | -0.059 |
| delta_otsA_trehalose | -0.184 | 0.289 |