Top 10 genes with highest correlation to Rv3682/ponA2:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0007/- | (cc=0.8839) | info on Rv0007/- |
| Rv2171/lppM | (cc=0.794) | info on Rv2171/lppM |
| Rv2700/- | (cc=0.7939) | info on Rv2700/- |
| Rv2203/- | (cc=0.647) | info on Rv2203/- |
| Rv1006/- | (cc=0.6072) | info on Rv1006/- |
| Rv2363/amiA2 | (cc=0.6002) | info on Rv2363/amiA2 |
| Rv1823/- | (cc=0.5926) | info on Rv1823/- |
| Rv0436c/pssA | (cc=0.5601) | info on Rv0436c/pssA |
| Rv2224c/caeA | (cc=0.5597) | info on Rv2224c/caeA |
| Rv1825/- | (cc=0.5484) | info on Rv1825/- |
Correlation of Rv3682/ponA2 with Rv0007/-
Normalized LFCs for Rv3682/ponA2:
(description and provenance of datasets)
| Rv3682/ponA2 | Rv0007/- | |
| Fe_supp_jason_reseq | 2.333 | 1.163 |
| low_pH_jason_reseq | 0.862 | -0.539 |
| NO_jason_reseq | 0.735 | -0.845 |
| B6_jason_reseq | -0.246 | -0.229 |
| MHCII_jason_reseq | 0.189 | 0.603 |
| Isoniazid02 | -0.941 | -0.535 |
| Rifampicin4 | -6.0 | -6.0 |
| Ethambutol3 | 0.383 | -0.824 |
| Meropenem3 | -4.704 | -3.279 |
| Vancomycin16 | -6.0 | -5.709 |
| Rv2680_day32 | -1.468 | -0.595 |
| H37Rv_KO_MarP | 2.554 | 1.208 |
| hypoxia_3wks | -3.118 | -2.644 |
| hypoxia_6wks | -2.159 | -3.733 |
| glycerol | 0.054 | -0.762 |
| cholesterol | 0.315 | 0.688 |
| AJ | -1.388 | -0.876 |
| Bibs02 | 0.356 | -0.775 |
| Bibs02c | 0.671 | 0.129 |
| BL6 | -0.809 | 1.282 |
| BL6a | 0.053 | -0.659 |
| BXD01 | -1.496 | -0.615 |
| BXD010 | -1.577 | -1.598 |
| BXD011 | -0.592 | -0.666 |
| BXD03 | -0.875 | -1.429 |
| BXD04 | -1.42 | -1.307 |
| BXD05 | -1.087 | -1.109 |
| BXD06 | -1.533 | -1.533 |
| BXD07 | -1.383 | -1.241 |
| BXD08 | -1.424 | -1.527 |
| BXD09 | -1.614 | -0.295 |
| CAST | -2.644 | -2.644 |
| CCcont | 2.728 | 1.962 |
| DS01 | -1.528 | -1.637 |
| DS02 | -1.301 | -0.821 |
| DS04 | -0.6 | -0.408 |
| DS0c | 1.051 | -0.372 |
| GP01 | 0.527 | 0.031 |
| GP02 | -0.775 | -0.955 |
| GP0c | -0.659 | -0.75 |
| NOD | -1.814 | -2.013 |
| NZO | -1.731 | -0.269 |
| PWK | -2.416 | -1.91 |
| H37Rv_KO_CtpC | 0.703 | -0.85 |
| H37Rv_KO_CtpD | -0.392 | -0.537 |
| H37Rv_KO_Rv1272 | -1.409 | -1.163 |
| H37Rv_KO_SugABC | 0.769 | -0.518 |
| H37Rv_KO_MbtN | 0.201 | 0.404 |
| Trans05 | -0.782 | -0.683 |
| macrophage_unactivated | 1.016 | -0.161 |
| IL1 | -0.572 | -0.635 |
| Rapamycin | 0.353 | -0.838 |
| Tcell | -1.098 | -0.336 |
| GMCSF | -0.161 | -0.882 |
| IFNab | 0.973 | 0.0 |
| IFNg | -0.901 | -1.066 |
| IFNg_GMCSF1 | -0.396 | 0.0 |
| Rv1432_day32 | -0.763 | -0.18 |
| Rv1565c_day32 | 6.0 | 6.0 |
| secA2_input | 1.645 | -0.65 |
| delta_Rv3594 | 1.034 | 1.193 |
| delta_Rv3717 | -0.876 | 0.115 |
| delta_Rv3811 | 0.193 | 0.99 |
| delta_Rv0954 | 1.442 | 1.81 |
| PonA1 | -4.498 | -3.696 |
| EccD1_KO | -2.434 | -1.842 |
| EspI_KO | -1.891 | -1.705 |
| PE35_KO | -1.006 | -0.817 |
| PPE68_KO | 0.573 | 0.019 |
| glycerol2 | -2.071 | -1.369 |
| lignocerate | -1.006 | -1.084 |
| oleate | -3.116 | -2.451 |
| phosphatidylcholine | -2.3 | -2.422 |
| acetate | 0.595 | 0.286 |
| glucAc | 0.056 | -0.176 |
| Rv0950ko | -0.591 | -1.342 |
| Rv1096ko | -3.553 | -0.965 |
| Rv3684ko | 1.136 | 0.986 |
| delta_otsA_trehalose | -0.184 | -0.576 |