Top 10 genes with highest correlation to Rv3669/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1404/- | (cc=0.5149) | info on Rv1404/- |
| Rv2040c/- | (cc=0.4922) | info on Rv2040c/- |
| Rv1028A/kdpF | (cc=0.4505) | info on Rv1028A/kdpF |
| Rv1003/- | (cc=0.4431) | info on Rv1003/- |
| Rv3215/entC | (cc=0.4125) | info on Rv3215/entC |
| Rv1928c/- | (cc=0.4004) | info on Rv1928c/- |
| Rv1129c/- | (cc=0.3879) | info on Rv1129c/- |
| Rv2437/- | (cc=0.3711) | info on Rv2437/- |
| Rv2316/uspA | (cc=0.3669) | info on Rv2316/uspA |
| Rv0948c/- | (cc=0.3665) | info on Rv0948c/- |
Correlation of Rv3669/- with Rv2437/-
Normalized LFCs for Rv3669/-:
(description and provenance of datasets)
| Rv3669/- | Rv2437/- | |
| Fe_supp_jason_reseq | 2.087 | 1.959 |
| low_pH_jason_reseq | -0.811 | 3.085 |
| NO_jason_reseq | -1.273 | -1.452 |
| B6_jason_reseq | 1.973 | 1.783 |
| MHCII_jason_reseq | -0.474 | 0.0 |
| Isoniazid02 | 0.21 | 1.534 |
| Rifampicin4 | 0.912 | 0.452 |
| Ethambutol3 | 0.617 | -0.261 |
| Meropenem3 | -0.409 | 0.337 |
| Vancomycin16 | 0.0 | 0.393 |
| Rv2680_day32 | 0.0 | 1.029 |
| H37Rv_KO_MarP | -0.669 | 1.6 |
| hypoxia_3wks | 0.267 | 0.379 |
| hypoxia_6wks | 2.362 | 0.253 |
| glycerol | -1.463 | 0.342 |
| cholesterol | 0.528 | 0.826 |
| AJ | -1.487 | -2.039 |
| Bibs02 | -1.673 | 1.521 |
| Bibs02c | -1.914 | -0.477 |
| BL6 | 0.053 | 0.234 |
| BL6a | -0.088 | 1.129 |
| BXD01 | -0.64 | 0.773 |
| BXD010 | 0.956 | 1.088 |
| BXD011 | 1.714 | 1.15 |
| BXD03 | 0.92 | 1.534 |
| BXD04 | -0.372 | 1.707 |
| BXD05 | 0.682 | 0.904 |
| BXD06 | 1.131 | 1.671 |
| BXD07 | 1.2 | 1.44 |
| BXD08 | -0.4 | 0.591 |
| BXD09 | 1.787 | 1.244 |
| CAST | -0.21 | -0.584 |
| CCcont | 1.049 | 0.643 |
| DS01 | -0.216 | -0.662 |
| DS02 | -0.531 | -1.207 |
| DS04 | -1.775 | -2.112 |
| DS0c | -1.985 | -1.128 |
| GP01 | -0.903 | -0.916 |
| GP02 | -0.761 | -1.124 |
| GP0c | -1.19 | -1.272 |
| NOD | -0.099 | -0.753 |
| NZO | -0.38 | -1.037 |
| PWK | 0.388 | 0.818 |
| H37Rv_KO_CtpC | 2.166 | -1.211 |
| H37Rv_KO_CtpD | -1.159 | -0.462 |
| H37Rv_KO_Rv1272 | -1.29 | 1.092 |
| H37Rv_KO_SugABC | -0.906 | -1.415 |
| H37Rv_KO_MbtN | -0.31 | 0.341 |
| Trans05 | -0.947 | 0.393 |
| macrophage_unactivated | 0.088 | 0.413 |
| IL1 | 2.334 | 1.0 |
| Rapamycin | 0.252 | 0.227 |
| Tcell | 0.0 | 0.241 |
| GMCSF | 1.809 | 0.594 |
| IFNab | 2.228 | 1.596 |
| IFNg | 0.69 | 0.668 |
| IFNg_GMCSF1 | 2.369 | 1.059 |
| Rv1432_day32 | 0.0 | 0.1 |
| Rv1565c_day32 | 0.0 | 1.14 |
| secA2_input | -3.131 | -0.443 |
| delta_Rv3594 | 1.306 | -0.558 |
| delta_Rv3717 | 2.017 | -0.872 |
| delta_Rv3811 | 2.411 | -0.507 |
| delta_Rv0954 | -0.792 | -0.935 |
| PonA1 | 0.986 | -0.286 |
| EccD1_KO | 0.454 | -0.329 |
| EspI_KO | 2.852 | 1.044 |
| PE35_KO | 1.263 | 2.576 |
| PPE68_KO | 0.0 | 2.598 |
| glycerol2 | 0.0 | 0.413 |
| lignocerate | 0.32 | 0.072 |
| oleate | 0.0 | 0.332 |
| phosphatidylcholine | 0.0 | 0.508 |
| acetate | 1.998 | -0.643 |
| glucAc | 1.306 | -0.501 |
| Rv0950ko | -1.372 | -1.251 |
| Rv1096ko | -2.069 | -0.947 |
| Rv3684ko | -0.684 | -2.345 |
| delta_otsA_trehalose | -0.667 | -0.176 |