Top 10 genes with highest correlation to Rv3669/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1404/- | (cc=0.5149) | info on Rv1404/- |
| Rv2040c/- | (cc=0.4922) | info on Rv2040c/- |
| Rv1028A/kdpF | (cc=0.4505) | info on Rv1028A/kdpF |
| Rv1003/- | (cc=0.4431) | info on Rv1003/- |
| Rv3215/entC | (cc=0.4125) | info on Rv3215/entC |
| Rv1928c/- | (cc=0.4004) | info on Rv1928c/- |
| Rv1129c/- | (cc=0.3879) | info on Rv1129c/- |
| Rv2437/- | (cc=0.3711) | info on Rv2437/- |
| Rv2316/uspA | (cc=0.3669) | info on Rv2316/uspA |
| Rv0948c/- | (cc=0.3665) | info on Rv0948c/- |
Correlation of Rv3669/- with Rv1028A/kdpF
Normalized LFCs for Rv3669/-:
(description and provenance of datasets)
| Rv3669/- | Rv1028A/kdpF | |
| Fe_supp_jason_reseq | 2.087 | -0.319 |
| low_pH_jason_reseq | -0.811 | 0.069 |
| NO_jason_reseq | -1.273 | 1.005 |
| B6_jason_reseq | 1.973 | -2.152 |
| MHCII_jason_reseq | -0.474 | -2.467 |
| Isoniazid02 | 0.21 | -0.739 |
| Rifampicin4 | 0.912 | -2.269 |
| Ethambutol3 | 0.617 | -0.682 |
| Meropenem3 | -0.409 | -1.351 |
| Vancomycin16 | 0.0 | -0.751 |
| Rv2680_day32 | 0.0 | -0.877 |
| H37Rv_KO_MarP | -0.669 | -1.242 |
| hypoxia_3wks | 0.267 | -0.175 |
| hypoxia_6wks | 2.362 | 0.608 |
| glycerol | -1.463 | -0.452 |
| cholesterol | 0.528 | -0.082 |
| AJ | -1.487 | -0.798 |
| Bibs02 | -1.673 | -1.044 |
| Bibs02c | -1.914 | -1.129 |
| BL6 | 0.053 | -0.198 |
| BL6a | -0.088 | 0.072 |
| BXD01 | -0.64 | -0.074 |
| BXD010 | 0.956 | -0.691 |
| BXD011 | 1.714 | 0.98 |
| BXD03 | 0.92 | 0.141 |
| BXD04 | -0.372 | 1.276 |
| BXD05 | 0.682 | 1.679 |
| BXD06 | 1.131 | 0.345 |
| BXD07 | 1.2 | 2.403 |
| BXD08 | -0.4 | 0.285 |
| BXD09 | 1.787 | 1.587 |
| CAST | -0.21 | 1.28 |
| CCcont | 1.049 | -0.514 |
| DS01 | -0.216 | -0.044 |
| DS02 | -0.531 | -3.956 |
| DS04 | -1.775 | -2.025 |
| DS0c | -1.985 | -2.49 |
| GP01 | -0.903 | -1.796 |
| GP02 | -0.761 | -1.513 |
| GP0c | -1.19 | -2.008 |
| NOD | -0.099 | -0.952 |
| NZO | -0.38 | -1.409 |
| PWK | 0.388 | -0.885 |
| H37Rv_KO_CtpC | 2.166 | -2.645 |
| H37Rv_KO_CtpD | -1.159 | -1.454 |
| H37Rv_KO_Rv1272 | -1.29 | -0.08 |
| H37Rv_KO_SugABC | -0.906 | -1.53 |
| H37Rv_KO_MbtN | -0.31 | -1.772 |
| Trans05 | -0.947 | 1.275 |
| macrophage_unactivated | 0.088 | 2.336 |
| IL1 | 2.334 | 1.792 |
| Rapamycin | 0.252 | 1.163 |
| Tcell | 0.0 | 0.74 |
| GMCSF | 1.809 | 1.999 |
| IFNab | 2.228 | 1.243 |
| IFNg | 0.69 | 0.981 |
| IFNg_GMCSF1 | 2.369 | 0.0 |
| Rv1432_day32 | 0.0 | 1.428 |
| Rv1565c_day32 | 0.0 | 0.218 |
| secA2_input | -3.131 | -3.15 |
| delta_Rv3594 | 1.306 | 4.447 |
| delta_Rv3717 | 2.017 | 3.312 |
| delta_Rv3811 | 2.411 | 3.227 |
| delta_Rv0954 | -0.792 | 2.048 |
| PonA1 | 0.986 | 0.159 |
| EccD1_KO | 0.454 | -0.888 |
| EspI_KO | 2.852 | 1.32 |
| PE35_KO | 1.263 | -0.726 |
| PPE68_KO | 0.0 | -2.668 |
| glycerol2 | 0.0 | 0.531 |
| lignocerate | 0.32 | 1.218 |
| oleate | 0.0 | 1.955 |
| phosphatidylcholine | 0.0 | 2.151 |
| acetate | 1.998 | 2.382 |
| glucAc | 1.306 | 1.481 |
| Rv0950ko | -1.372 | 0.106 |
| Rv1096ko | -2.069 | -0.054 |
| Rv3684ko | -0.684 | -0.177 |
| delta_otsA_trehalose | -0.667 | -1.314 |