Top 10 genes with highest correlation to Rv3669/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1404/- | (cc=0.5149) | info on Rv1404/- |
| Rv2040c/- | (cc=0.4922) | info on Rv2040c/- |
| Rv1028A/kdpF | (cc=0.4505) | info on Rv1028A/kdpF |
| Rv1003/- | (cc=0.4431) | info on Rv1003/- |
| Rv3215/entC | (cc=0.4125) | info on Rv3215/entC |
| Rv1928c/- | (cc=0.4004) | info on Rv1928c/- |
| Rv1129c/- | (cc=0.3879) | info on Rv1129c/- |
| Rv2437/- | (cc=0.3711) | info on Rv2437/- |
| Rv2316/uspA | (cc=0.3669) | info on Rv2316/uspA |
| Rv0948c/- | (cc=0.3665) | info on Rv0948c/- |
Correlation of Rv3669/- with Rv2040c/-
Normalized LFCs for Rv3669/-:
(description and provenance of datasets)
| Rv3669/- | Rv2040c/- | |
| Fe_supp_jason_reseq | 2.087 | 0.032 |
| low_pH_jason_reseq | -0.811 | 0.291 |
| NO_jason_reseq | -1.273 | -0.399 |
| B6_jason_reseq | 1.973 | -0.415 |
| MHCII_jason_reseq | -0.474 | -1.451 |
| Isoniazid02 | 0.21 | -0.255 |
| Rifampicin4 | 0.912 | 0.252 |
| Ethambutol3 | 0.617 | -0.27 |
| Meropenem3 | -0.409 | -0.266 |
| Vancomycin16 | 0.0 | 0.247 |
| Rv2680_day32 | 0.0 | 0.687 |
| H37Rv_KO_MarP | -0.669 | -0.052 |
| hypoxia_3wks | 0.267 | 0.467 |
| hypoxia_6wks | 2.362 | -0.065 |
| glycerol | -1.463 | -0.23 |
| cholesterol | 0.528 | -0.378 |
| AJ | -1.487 | 0.513 |
| Bibs02 | -1.673 | -2.245 |
| Bibs02c | -1.914 | -1.391 |
| BL6 | 0.053 | 1.183 |
| BL6a | -0.088 | -0.03 |
| BXD01 | -0.64 | 0.84 |
| BXD010 | 0.956 | 0.656 |
| BXD011 | 1.714 | 2.53 |
| BXD03 | 0.92 | 0.755 |
| BXD04 | -0.372 | 0.091 |
| BXD05 | 0.682 | 0.598 |
| BXD06 | 1.131 | 0.328 |
| BXD07 | 1.2 | 0.042 |
| BXD08 | -0.4 | 0.118 |
| BXD09 | 1.787 | 0.87 |
| CAST | -0.21 | -0.425 |
| CCcont | 1.049 | 1.059 |
| DS01 | -0.216 | -1.131 |
| DS02 | -0.531 | -0.792 |
| DS04 | -1.775 | -0.468 |
| DS0c | -1.985 | -0.247 |
| GP01 | -0.903 | -0.601 |
| GP02 | -0.761 | -1.109 |
| GP0c | -1.19 | -0.865 |
| NOD | -0.099 | 0.76 |
| NZO | -0.38 | -0.727 |
| PWK | 0.388 | 0.06 |
| H37Rv_KO_CtpC | 2.166 | 0.567 |
| H37Rv_KO_CtpD | -1.159 | 0.039 |
| H37Rv_KO_Rv1272 | -1.29 | 1.84 |
| H37Rv_KO_SugABC | -0.906 | -0.918 |
| H37Rv_KO_MbtN | -0.31 | -0.421 |
| Trans05 | -0.947 | 1.52 |
| macrophage_unactivated | 0.088 | 0.325 |
| IL1 | 2.334 | 0.089 |
| Rapamycin | 0.252 | -0.046 |
| Tcell | 0.0 | 0.147 |
| GMCSF | 1.809 | 0.729 |
| IFNab | 2.228 | 0.091 |
| IFNg | 0.69 | -0.385 |
| IFNg_GMCSF1 | 2.369 | 0.826 |
| Rv1432_day32 | 0.0 | -0.415 |
| Rv1565c_day32 | 0.0 | -0.584 |
| secA2_input | -3.131 | -2.616 |
| delta_Rv3594 | 1.306 | 0.352 |
| delta_Rv3717 | 2.017 | 0.044 |
| delta_Rv3811 | 2.411 | 0.696 |
| delta_Rv0954 | -0.792 | -0.439 |
| PonA1 | 0.986 | 0.212 |
| EccD1_KO | 0.454 | 0.605 |
| EspI_KO | 2.852 | 0.727 |
| PE35_KO | 1.263 | 1.164 |
| PPE68_KO | 0.0 | 1.072 |
| glycerol2 | 0.0 | -0.273 |
| lignocerate | 0.32 | 0.012 |
| oleate | 0.0 | -0.597 |
| phosphatidylcholine | 0.0 | 0.193 |
| acetate | 1.998 | -0.032 |
| glucAc | 1.306 | 0.105 |
| Rv0950ko | -1.372 | -0.645 |
| Rv1096ko | -2.069 | -1.23 |
| Rv3684ko | -0.684 | -2.021 |
| delta_otsA_trehalose | -0.667 | -0.103 |