Top 10 genes with highest correlation to Rv3669/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1404/- | (cc=0.5149) | info on Rv1404/- |
| Rv2040c/- | (cc=0.4922) | info on Rv2040c/- |
| Rv1028A/kdpF | (cc=0.4505) | info on Rv1028A/kdpF |
| Rv1003/- | (cc=0.4431) | info on Rv1003/- |
| Rv3215/entC | (cc=0.4125) | info on Rv3215/entC |
| Rv1928c/- | (cc=0.4004) | info on Rv1928c/- |
| Rv1129c/- | (cc=0.3879) | info on Rv1129c/- |
| Rv2437/- | (cc=0.3711) | info on Rv2437/- |
| Rv2316/uspA | (cc=0.3669) | info on Rv2316/uspA |
| Rv0948c/- | (cc=0.3665) | info on Rv0948c/- |
Correlation of Rv3669/- with Rv2316/uspA
Normalized LFCs for Rv3669/-:
(description and provenance of datasets)
| Rv3669/- | Rv2316/uspA | |
| Fe_supp_jason_reseq | 2.087 | 0.63 |
| low_pH_jason_reseq | -0.811 | -0.261 |
| NO_jason_reseq | -1.273 | 0.042 |
| B6_jason_reseq | 1.973 | -0.509 |
| MHCII_jason_reseq | -0.474 | -0.226 |
| Isoniazid02 | 0.21 | 0.994 |
| Rifampicin4 | 0.912 | 0.558 |
| Ethambutol3 | 0.617 | 0.904 |
| Meropenem3 | -0.409 | 1.515 |
| Vancomycin16 | 0.0 | 0.764 |
| Rv2680_day32 | 0.0 | 0.602 |
| H37Rv_KO_MarP | -0.669 | 0.859 |
| hypoxia_3wks | 0.267 | 0.335 |
| hypoxia_6wks | 2.362 | 0.34 |
| glycerol | -1.463 | -0.129 |
| cholesterol | 0.528 | -0.174 |
| AJ | -1.487 | -0.123 |
| Bibs02 | -1.673 | -0.264 |
| Bibs02c | -1.914 | 0.186 |
| BL6 | 0.053 | 0.135 |
| BL6a | -0.088 | 0.119 |
| BXD01 | -0.64 | 0.52 |
| BXD010 | 0.956 | 0.846 |
| BXD011 | 1.714 | -0.041 |
| BXD03 | 0.92 | 0.014 |
| BXD04 | -0.372 | 0.145 |
| BXD05 | 0.682 | 0.277 |
| BXD06 | 1.131 | 0.286 |
| BXD07 | 1.2 | 0.213 |
| BXD08 | -0.4 | -0.175 |
| BXD09 | 1.787 | 0.084 |
| CAST | -0.21 | -0.147 |
| CCcont | 1.049 | 0.849 |
| DS01 | -0.216 | -0.575 |
| DS02 | -0.531 | -1.341 |
| DS04 | -1.775 | -0.167 |
| DS0c | -1.985 | -0.286 |
| GP01 | -0.903 | -0.063 |
| GP02 | -0.761 | 1.378 |
| GP0c | -1.19 | 0.675 |
| NOD | -0.099 | -0.607 |
| NZO | -0.38 | 0.081 |
| PWK | 0.388 | -0.968 |
| H37Rv_KO_CtpC | 2.166 | 1.091 |
| H37Rv_KO_CtpD | -1.159 | 0.584 |
| H37Rv_KO_Rv1272 | -1.29 | -0.272 |
| H37Rv_KO_SugABC | -0.906 | -0.489 |
| H37Rv_KO_MbtN | -0.31 | 0.352 |
| Trans05 | -0.947 | -1.016 |
| macrophage_unactivated | 0.088 | 0.865 |
| IL1 | 2.334 | 1.231 |
| Rapamycin | 0.252 | 1.013 |
| Tcell | 0.0 | 1.352 |
| GMCSF | 1.809 | 1.122 |
| IFNab | 2.228 | 1.672 |
| IFNg | 0.69 | 1.577 |
| IFNg_GMCSF1 | 2.369 | 0.528 |
| Rv1432_day32 | 0.0 | 0.275 |
| Rv1565c_day32 | 0.0 | -0.049 |
| secA2_input | -3.131 | -1.841 |
| delta_Rv3594 | 1.306 | 1.51 |
| delta_Rv3717 | 2.017 | 1.805 |
| delta_Rv3811 | 2.411 | 1.227 |
| delta_Rv0954 | -0.792 | 0.512 |
| PonA1 | 0.986 | 0.645 |
| EccD1_KO | 0.454 | -1.737 |
| EspI_KO | 2.852 | -0.151 |
| PE35_KO | 1.263 | -0.038 |
| PPE68_KO | 0.0 | -0.969 |
| glycerol2 | 0.0 | 0.661 |
| lignocerate | 0.32 | 0.347 |
| oleate | 0.0 | 0.432 |
| phosphatidylcholine | 0.0 | 0.508 |
| acetate | 1.998 | 0.231 |
| glucAc | 1.306 | -0.09 |
| Rv0950ko | -1.372 | 0.603 |
| Rv1096ko | -2.069 | 0.045 |
| Rv3684ko | -0.684 | 1.497 |
| delta_otsA_trehalose | -0.667 | -0.612 |