TnSeqCorr

Top 10 genes with highest correlation to Rv3568c/hsaC:

update plotcorrelationlink to info on gene
Rv3544c/fadE28 (cc=0.7318) info on Rv3544c/fadE28
Rv3551/- (cc=0.7243) info on Rv3551/-
Rv3502c/- (cc=0.7069) info on Rv3502c/-
Rv3614c/espD (cc=0.6944) info on Rv3614c/espD
Rv2604c/snoP (cc=0.6881) info on Rv2604c/snoP
Rv3883c/mycP1 (cc=0.6731) info on Rv3883c/mycP1
Rv3542c/- (cc=0.6704) info on Rv3542c/-
Rv3615c/espC (cc=0.6674) info on Rv3615c/espC
Rv3870/eccCa1 (cc=0.6632) info on Rv3870/eccCa1
Rv3556c/fadA6 (cc=0.6572) info on Rv3556c/fadA6

Correlation of Rv3568c/hsaC with Rv3883c/mycP1

Normalized LFCs for Rv3568c/hsaC:
(description and provenance of datasets)
Rv3568c/hsaCRv3883c/mycP1
Fe_supp_jason_reseq

-0.95

-0.161

low_pH_jason_reseq

0.791

-0.589

NO_jason_reseq

-0.735

-0.045

B6_jason_reseq

-0.818

-3.12

MHCII_jason_reseq

-1.422

-3.913

Isoniazid02

-1.995

-0.885

Rifampicin4

0.273

-1.053

Ethambutol3

-1.789

0.252

Meropenem3

-1.62

-0.231

Vancomycin16

-0.785

-0.462

Rv2680_day32

-1.381

-2.251

H37Rv_KO_MarP

0.313

1.597

hypoxia_3wks

0.0

-0.355

hypoxia_6wks

-0.177

0.175

glycerol

-0.162

-0.764

cholesterol

-3.167

-0.581

AJ

-2.575

-5.867

Bibs02

-3.354

-6.0

Bibs02c

-4.365

-4.351

BL6

-1.214

-2.065

BL6a

-2.896

-4.328

BXD01

-1.713

-3.632

BXD010

-2.171

-3.901

BXD011

-1.279

-3.552

BXD03

-1.358

-3.288

BXD04

-1.874

-2.296

BXD05

-1.263

-4.1

BXD06

-1.818

-3.557

BXD07

-1.822

-4.053

BXD08

-1.75

-3.234

BXD09

-1.614

-4.341

CAST

-1.582

-5.252

CCcont

-1.45

-1.006

DS01

-3.853

-3.605

DS02

-2.414

-5.339

DS04

-2.738

-2.943

DS0c

-1.776

-5.129

GP01

-1.496

-3.05

GP02

-1.819

-3.038

GP0c

-1.97

-2.036

NOD

-1.715

-2.301

NZO

-3.135

-6.0

PWK

-2.106

-5.817

H37Rv_KO_CtpC

-1.631

-1.704

H37Rv_KO_CtpD

-2.066

-1.909

H37Rv_KO_Rv1272

-1.855

-1.436

H37Rv_KO_SugABC

0.39

-1.738

H37Rv_KO_MbtN

-1.183

-0.396

Trans05

-1.551

-1.315

macrophage_unactivated

-2.326

-1.19

IL1

0.071

-1.252

Rapamycin

-0.074

0.0

Tcell

-2.809

-2.395

GMCSF

-1.27

-0.415

IFNab

0.856

1.856

IFNg

-0.406

-1.729

IFNg_GMCSF1

-0.154

-1.621

Rv1432_day32

-0.884

-1.64

Rv1565c_day32

-1.284

-3.135

secA2_input

-0.266

-0.377

delta_Rv3594

0.647

-0.72

delta_Rv3717

0.076

0.113

delta_Rv3811

0.217

-0.181

delta_Rv0954

-0.775

-0.344

PonA1

-0.589

-0.492

EccD1_KO

1.181

0.395

EspI_KO

1.358

0.265

PE35_KO

1.324

-0.158

PPE68_KO

1.379

0.122

glycerol2

-0.191

0.558

lignocerate

-1.263

0.721

oleate

0.269

0.427

phosphatidylcholine

-0.706

0.165

acetate

-0.474

-0.023

glucAc

-1.957

-0.022

Rv0950ko

-0.157

-0.112

Rv1096ko

1.016

-0.567

Rv3684ko

0.242

0.069

delta_otsA_trehalose

1.813

0.004