TnSeqCorr

Top 10 genes with highest correlation to Rv3568c/hsaC:

update plotcorrelationlink to info on gene
Rv3544c/fadE28 (cc=0.7318) info on Rv3544c/fadE28
Rv3551/- (cc=0.7243) info on Rv3551/-
Rv3502c/- (cc=0.7069) info on Rv3502c/-
Rv3614c/espD (cc=0.6944) info on Rv3614c/espD
Rv2604c/snoP (cc=0.6881) info on Rv2604c/snoP
Rv3883c/mycP1 (cc=0.6731) info on Rv3883c/mycP1
Rv3542c/- (cc=0.6704) info on Rv3542c/-
Rv3615c/espC (cc=0.6674) info on Rv3615c/espC
Rv3870/eccCa1 (cc=0.6632) info on Rv3870/eccCa1
Rv3556c/fadA6 (cc=0.6572) info on Rv3556c/fadA6

Correlation of Rv3568c/hsaC with Rv3870/eccCa1

Normalized LFCs for Rv3568c/hsaC:
(description and provenance of datasets)
Rv3568c/hsaCRv3870/eccCa1
Fe_supp_jason_reseq

-0.95

-1.088

low_pH_jason_reseq

0.791

0.325

NO_jason_reseq

-0.735

-0.291

B6_jason_reseq

-0.818

-2.875

MHCII_jason_reseq

-1.422

-3.014

Isoniazid02

-1.995

-0.306

Rifampicin4

0.273

-0.888

Ethambutol3

-1.789

-0.131

Meropenem3

-1.62

0.261

Vancomycin16

-0.785

-0.215

Rv2680_day32

-1.381

-1.924

H37Rv_KO_MarP

0.313

1.534

hypoxia_3wks

0.0

-0.152

hypoxia_6wks

-0.177

0.142

glycerol

-0.162

-0.78

cholesterol

-3.167

-0.197

AJ

-2.575

-5.284

Bibs02

-3.354

-5.766

Bibs02c

-4.365

-4.15

BL6

-1.214

-1.616

BL6a

-2.896

-4.402

BXD01

-1.713

-3.251

BXD010

-2.171

-2.846

BXD011

-1.279

-2.901

BXD03

-1.358

-2.571

BXD04

-1.874

-2.748

BXD05

-1.263

-2.789

BXD06

-1.818

-3.586

BXD07

-1.822

-2.661

BXD08

-1.75

-3.816

BXD09

-1.614

-3.836

CAST

-1.582

-4.883

CCcont

-1.45

-0.407

DS01

-3.853

-4.356

DS02

-2.414

-4.052

DS04

-2.738

-2.155

DS0c

-1.776

-4.302

GP01

-1.496

-2.367

GP02

-1.819

-2.347

GP0c

-1.97

-0.842

NOD

-1.715

-1.925

NZO

-3.135

-5.444

PWK

-2.106

-5.533

H37Rv_KO_CtpC

-1.631

-1.66

H37Rv_KO_CtpD

-2.066

-1.651

H37Rv_KO_Rv1272

-1.855

-1.806

H37Rv_KO_SugABC

0.39

-0.647

H37Rv_KO_MbtN

-1.183

0.049

Trans05

-1.551

-1.38

macrophage_unactivated

-2.326

-0.262

IL1

0.071

-0.246

Rapamycin

-0.074

-0.288

Tcell

-2.809

-1.541

GMCSF

-1.27

0.681

IFNab

0.856

1.859

IFNg

-0.406

-1.497

IFNg_GMCSF1

-0.154

-1.313

Rv1432_day32

-0.884

-2.52

Rv1565c_day32

-1.284

-2.663

secA2_input

-0.266

0.036

delta_Rv3594

0.647

0.106

delta_Rv3717

0.076

-0.101

delta_Rv3811

0.217

-0.233

delta_Rv0954

-0.775

0.379

PonA1

-0.589

0.384

EccD1_KO

1.181

0.342

EspI_KO

1.358

0.633

PE35_KO

1.324

0.257

PPE68_KO

1.379

0.214

glycerol2

-0.191

0.423

lignocerate

-1.263

0.792

oleate

0.269

-0.193

phosphatidylcholine

-0.706

0.531

acetate

-0.474

0.095

glucAc

-1.957

0.366

Rv0950ko

-0.157

0.356

Rv1096ko

1.016

-0.229

Rv3684ko

0.242

0.37

delta_otsA_trehalose

1.813

-0.994