Top 10 genes with highest correlation to Rv3516/echA19:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0253/nirD | (cc=0.4577) | info on Rv0253/nirD |
| Rv3386/- | (cc=0.4448) | info on Rv3386/- |
| Rv0374c/- | (cc=0.4229) | info on Rv0374c/- |
| Rv0870c/- | (cc=0.4202) | info on Rv0870c/- |
| Rv1038c/esxJ | (cc=0.3917) | info on Rv1038c/esxJ |
| Rv1583c/- | (cc=0.3857) | info on Rv1583c/- |
| Rv1508A/- | (cc=0.3777) | info on Rv1508A/- |
| Rv2998/- | (cc=0.3731) | info on Rv2998/- |
| Rv0264c/- | (cc=0.3645) | info on Rv0264c/- |
| Rv1450c/PE_PGRS27 | (cc=0.3629) | info on Rv1450c/PE_PGRS27 |
Correlation of Rv3516/echA19 with Rv1038c/esxJ
Normalized LFCs for Rv3516/echA19:
(description and provenance of datasets)
| Rv3516/echA19 | Rv1038c/esxJ | |
| Fe_supp_jason_reseq | 0.338 | 0.302 |
| low_pH_jason_reseq | 0.989 | -0.724 |
| NO_jason_reseq | 0.244 | -0.436 |
| B6_jason_reseq | -0.967 | -0.523 |
| MHCII_jason_reseq | 0.829 | 0.249 |
| Isoniazid02 | -0.163 | -0.41 |
| Rifampicin4 | 0.753 | -0.495 |
| Ethambutol3 | -0.447 | 0.225 |
| Meropenem3 | -0.111 | 0.491 |
| Vancomycin16 | 0.231 | -1.329 |
| Rv2680_day32 | -2.334 | -0.177 |
| H37Rv_KO_MarP | 0.078 | 0.772 |
| hypoxia_3wks | -0.929 | -0.993 |
| hypoxia_6wks | -0.562 | -1.151 |
| glycerol | -0.325 | 0.423 |
| cholesterol | -1.093 | -0.552 |
| AJ | 0.741 | -0.842 |
| Bibs02 | -0.327 | 0.411 |
| Bibs02c | -0.196 | -0.1 |
| BL6 | 0.614 | 1.316 |
| BL6a | -0.319 | -0.864 |
| BXD01 | -0.143 | 0.125 |
| BXD010 | 0.437 | -0.634 |
| BXD011 | 0.018 | -1.466 |
| BXD03 | -0.366 | -1.113 |
| BXD04 | 0.81 | -1.114 |
| BXD05 | 0.473 | -0.336 |
| BXD06 | 0.366 | -0.509 |
| BXD07 | -1.088 | -0.793 |
| BXD08 | 0.702 | -1.279 |
| BXD09 | -0.408 | -1.072 |
| CAST | -0.215 | 0.701 |
| CCcont | -0.293 | 0.055 |
| DS01 | 0.929 | -0.161 |
| DS02 | -2.002 | -0.948 |
| DS04 | 0.167 | -1.678 |
| DS0c | -0.762 | -0.896 |
| GP01 | 0.708 | -0.883 |
| GP02 | -0.225 | 0.533 |
| GP0c | 0.59 | -0.304 |
| NOD | 2.394 | 1.053 |
| NZO | -0.428 | -0.142 |
| PWK | 0.516 | -0.669 |
| H37Rv_KO_CtpC | -0.025 | 0.479 |
| H37Rv_KO_CtpD | 1.294 | 0.146 |
| H37Rv_KO_Rv1272 | 0.197 | -0.271 |
| H37Rv_KO_SugABC | -1.594 | -1.56 |
| H37Rv_KO_MbtN | -1.109 | -1.923 |
| Trans05 | 0.487 | -0.246 |
| macrophage_unactivated | -0.922 | 0.117 |
| IL1 | 1.735 | -0.068 |
| Rapamycin | 1.163 | 0.463 |
| Tcell | -0.495 | -0.358 |
| GMCSF | -0.195 | 1.18 |
| IFNab | -0.707 | 0.311 |
| IFNg | -0.703 | -0.208 |
| IFNg_GMCSF1 | -1.106 | -0.723 |
| Rv1432_day32 | 3.125 | 0.965 |
| Rv1565c_day32 | 0.0 | -0.15 |
| secA2_input | 0.26 | -0.027 |
| delta_Rv3594 | -1.807 | -0.353 |
| delta_Rv3717 | -0.453 | 0.019 |
| delta_Rv3811 | -0.474 | -0.54 |
| delta_Rv0954 | -1.464 | 0.133 |
| PonA1 | -1.363 | 0.175 |
| EccD1_KO | 0.967 | 0.835 |
| EspI_KO | 0.838 | 0.1 |
| PE35_KO | -1.747 | 0.72 |
| PPE68_KO | -0.41 | 0.861 |
| glycerol2 | 0.496 | 2.5 |
| lignocerate | 1.313 | 3.087 |
| oleate | -0.829 | -0.116 |
| phosphatidylcholine | 0.819 | 2.105 |
| acetate | 1.792 | 2.793 |
| glucAc | 1.96 | 3.101 |
| Rv0950ko | 0.296 | 0.516 |
| Rv1096ko | 0.884 | 0.516 |
| Rv3684ko | -0.563 | -0.396 |
| delta_otsA_trehalose | -2.511 | 0.257 |