Top 10 genes with highest correlation to Rv3516/echA19:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0253/nirD | (cc=0.4577) | info on Rv0253/nirD |
| Rv3386/- | (cc=0.4448) | info on Rv3386/- |
| Rv0374c/- | (cc=0.4229) | info on Rv0374c/- |
| Rv0870c/- | (cc=0.4202) | info on Rv0870c/- |
| Rv1038c/esxJ | (cc=0.3917) | info on Rv1038c/esxJ |
| Rv1583c/- | (cc=0.3857) | info on Rv1583c/- |
| Rv1508A/- | (cc=0.3777) | info on Rv1508A/- |
| Rv2998/- | (cc=0.3731) | info on Rv2998/- |
| Rv0264c/- | (cc=0.3645) | info on Rv0264c/- |
| Rv1450c/PE_PGRS27 | (cc=0.3629) | info on Rv1450c/PE_PGRS27 |
Correlation of Rv3516/echA19 with Rv0870c/-
Normalized LFCs for Rv3516/echA19:
(description and provenance of datasets)
| Rv3516/echA19 | Rv0870c/- | |
| Fe_supp_jason_reseq | 0.338 | -0.062 |
| low_pH_jason_reseq | 0.989 | -0.308 |
| NO_jason_reseq | 0.244 | 1.013 |
| B6_jason_reseq | -0.967 | -0.715 |
| MHCII_jason_reseq | 0.829 | 0.731 |
| Isoniazid02 | -0.163 | -0.664 |
| Rifampicin4 | 0.753 | -0.485 |
| Ethambutol3 | -0.447 | -0.136 |
| Meropenem3 | -0.111 | 0.908 |
| Vancomycin16 | 0.231 | 0.088 |
| Rv2680_day32 | -2.334 | -0.139 |
| H37Rv_KO_MarP | 0.078 | 0.68 |
| hypoxia_3wks | -0.929 | -0.642 |
| hypoxia_6wks | -0.562 | -0.576 |
| glycerol | -0.325 | -0.799 |
| cholesterol | -1.093 | -0.376 |
| AJ | 0.741 | -0.373 |
| Bibs02 | -0.327 | 0.491 |
| Bibs02c | -0.196 | 0.109 |
| BL6 | 0.614 | -0.324 |
| BL6a | -0.319 | -0.696 |
| BXD01 | -0.143 | -0.852 |
| BXD010 | 0.437 | -0.156 |
| BXD011 | 0.018 | -0.188 |
| BXD03 | -0.366 | -1.092 |
| BXD04 | 0.81 | -0.503 |
| BXD05 | 0.473 | -0.666 |
| BXD06 | 0.366 | -0.854 |
| BXD07 | -1.088 | -0.255 |
| BXD08 | 0.702 | -0.708 |
| BXD09 | -0.408 | -0.85 |
| CAST | -0.215 | -0.654 |
| CCcont | -0.293 | 0.553 |
| DS01 | 0.929 | 0.036 |
| DS02 | -2.002 | 0.025 |
| DS04 | 0.167 | 0.044 |
| DS0c | -0.762 | 0.409 |
| GP01 | 0.708 | 0.381 |
| GP02 | -0.225 | 0.828 |
| GP0c | 0.59 | -0.726 |
| NOD | 2.394 | -0.187 |
| NZO | -0.428 | 0.023 |
| PWK | 0.516 | -0.509 |
| H37Rv_KO_CtpC | -0.025 | -0.845 |
| H37Rv_KO_CtpD | 1.294 | 0.934 |
| H37Rv_KO_Rv1272 | 0.197 | -2.361 |
| H37Rv_KO_SugABC | -1.594 | -1.757 |
| H37Rv_KO_MbtN | -1.109 | -1.421 |
| Trans05 | 0.487 | -0.187 |
| macrophage_unactivated | -0.922 | -1.884 |
| IL1 | 1.735 | 0.252 |
| Rapamycin | 1.163 | -0.181 |
| Tcell | -0.495 | -0.606 |
| GMCSF | -0.195 | -0.269 |
| IFNab | -0.707 | -0.308 |
| IFNg | -0.703 | -0.208 |
| IFNg_GMCSF1 | -1.106 | -0.503 |
| Rv1432_day32 | 3.125 | 1.802 |
| Rv1565c_day32 | 0.0 | 0.697 |
| secA2_input | 0.26 | -0.183 |
| delta_Rv3594 | -1.807 | -0.375 |
| delta_Rv3717 | -0.453 | -0.852 |
| delta_Rv3811 | -0.474 | -1.689 |
| delta_Rv0954 | -1.464 | -0.673 |
| PonA1 | -1.363 | 0.143 |
| EccD1_KO | 0.967 | 1.095 |
| EspI_KO | 0.838 | 0.744 |
| PE35_KO | -1.747 | -0.405 |
| PPE68_KO | -0.41 | -0.893 |
| glycerol2 | 0.496 | 1.562 |
| lignocerate | 1.313 | 2.115 |
| oleate | -0.829 | -0.425 |
| phosphatidylcholine | 0.819 | 1.562 |
| acetate | 1.792 | 1.637 |
| glucAc | 1.96 | 1.823 |
| Rv0950ko | 0.296 | 0.781 |
| Rv1096ko | 0.884 | 0.241 |
| Rv3684ko | -0.563 | 0.848 |
| delta_otsA_trehalose | -2.511 | 0.897 |