Top 10 genes with highest correlation to Rv3516/echA19:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0253/nirD | (cc=0.4577) | info on Rv0253/nirD |
| Rv3386/- | (cc=0.4448) | info on Rv3386/- |
| Rv0374c/- | (cc=0.4229) | info on Rv0374c/- |
| Rv0870c/- | (cc=0.4202) | info on Rv0870c/- |
| Rv1038c/esxJ | (cc=0.3917) | info on Rv1038c/esxJ |
| Rv1583c/- | (cc=0.3857) | info on Rv1583c/- |
| Rv1508A/- | (cc=0.3777) | info on Rv1508A/- |
| Rv2998/- | (cc=0.3731) | info on Rv2998/- |
| Rv0264c/- | (cc=0.3645) | info on Rv0264c/- |
| Rv1450c/PE_PGRS27 | (cc=0.3629) | info on Rv1450c/PE_PGRS27 |
Correlation of Rv3516/echA19 with Rv0264c/-
Normalized LFCs for Rv3516/echA19:
(description and provenance of datasets)
| Rv3516/echA19 | Rv0264c/- | |
| Fe_supp_jason_reseq | 0.338 | -0.611 |
| low_pH_jason_reseq | 0.989 | -0.985 |
| NO_jason_reseq | 0.244 | 0.236 |
| B6_jason_reseq | -0.967 | 0.63 |
| MHCII_jason_reseq | 0.829 | 1.238 |
| Isoniazid02 | -0.163 | -0.14 |
| Rifampicin4 | 0.753 | 0.717 |
| Ethambutol3 | -0.447 | 0.376 |
| Meropenem3 | -0.111 | 1.133 |
| Vancomycin16 | 0.231 | 0.846 |
| Rv2680_day32 | -2.334 | 0.509 |
| H37Rv_KO_MarP | 0.078 | 0.134 |
| hypoxia_3wks | -0.929 | -0.303 |
| hypoxia_6wks | -0.562 | -0.639 |
| glycerol | -0.325 | 0.25 |
| cholesterol | -1.093 | -0.18 |
| AJ | 0.741 | 1.178 |
| Bibs02 | -0.327 | -1.129 |
| Bibs02c | -0.196 | 0.976 |
| BL6 | 0.614 | 0.222 |
| BL6a | -0.319 | 0.808 |
| BXD01 | -0.143 | -0.404 |
| BXD010 | 0.437 | -0.126 |
| BXD011 | 0.018 | -0.808 |
| BXD03 | -0.366 | -0.32 |
| BXD04 | 0.81 | -0.732 |
| BXD05 | 0.473 | -0.505 |
| BXD06 | 0.366 | -0.575 |
| BXD07 | -1.088 | -0.626 |
| BXD08 | 0.702 | -0.188 |
| BXD09 | -0.408 | -0.392 |
| CAST | -0.215 | 0.772 |
| CCcont | -0.293 | 0.357 |
| DS01 | 0.929 | 0.171 |
| DS02 | -2.002 | 0.503 |
| DS04 | 0.167 | 0.072 |
| DS0c | -0.762 | 0.223 |
| GP01 | 0.708 | 0.484 |
| GP02 | -0.225 | 0.872 |
| GP0c | 0.59 | 0.391 |
| NOD | 2.394 | 0.26 |
| NZO | -0.428 | -0.01 |
| PWK | 0.516 | -0.352 |
| H37Rv_KO_CtpC | -0.025 | -0.7 |
| H37Rv_KO_CtpD | 1.294 | 0.42 |
| H37Rv_KO_Rv1272 | 0.197 | -0.132 |
| H37Rv_KO_SugABC | -1.594 | -0.456 |
| H37Rv_KO_MbtN | -1.109 | -0.961 |
| Trans05 | 0.487 | 0.734 |
| macrophage_unactivated | -0.922 | -0.609 |
| IL1 | 1.735 | 0.181 |
| Rapamycin | 1.163 | 0.049 |
| Tcell | -0.495 | -0.775 |
| GMCSF | -0.195 | 0.042 |
| IFNab | -0.707 | -0.048 |
| IFNg | -0.703 | -0.973 |
| IFNg_GMCSF1 | -1.106 | -0.255 |
| Rv1432_day32 | 3.125 | -0.083 |
| Rv1565c_day32 | 0.0 | -1.017 |
| secA2_input | 0.26 | -0.939 |
| delta_Rv3594 | -1.807 | -0.864 |
| delta_Rv3717 | -0.453 | -0.526 |
| delta_Rv3811 | -0.474 | 0.271 |
| delta_Rv0954 | -1.464 | 0.324 |
| PonA1 | -1.363 | -0.694 |
| EccD1_KO | 0.967 | -0.178 |
| EspI_KO | 0.838 | 0.043 |
| PE35_KO | -1.747 | -0.414 |
| PPE68_KO | -0.41 | -0.454 |
| glycerol2 | 0.496 | 1.75 |
| lignocerate | 1.313 | 2.026 |
| oleate | -0.829 | 0.149 |
| phosphatidylcholine | 0.819 | 1.905 |
| acetate | 1.792 | 2.364 |
| glucAc | 1.96 | 2.01 |
| Rv0950ko | 0.296 | 0.244 |
| Rv1096ko | 0.884 | 0.0 |
| Rv3684ko | -0.563 | -1.107 |
| delta_otsA_trehalose | -2.511 | -0.639 |