Top 10 genes with highest correlation to Rv3516/echA19:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0253/nirD | (cc=0.4577) | info on Rv0253/nirD |
| Rv3386/- | (cc=0.4448) | info on Rv3386/- |
| Rv0374c/- | (cc=0.4229) | info on Rv0374c/- |
| Rv0870c/- | (cc=0.4202) | info on Rv0870c/- |
| Rv1038c/esxJ | (cc=0.3917) | info on Rv1038c/esxJ |
| Rv1583c/- | (cc=0.3857) | info on Rv1583c/- |
| Rv1508A/- | (cc=0.3777) | info on Rv1508A/- |
| Rv2998/- | (cc=0.3731) | info on Rv2998/- |
| Rv0264c/- | (cc=0.3645) | info on Rv0264c/- |
| Rv1450c/PE_PGRS27 | (cc=0.3629) | info on Rv1450c/PE_PGRS27 |
Correlation of Rv3516/echA19 with Rv0253/nirD
Normalized LFCs for Rv3516/echA19:
(description and provenance of datasets)
| Rv3516/echA19 | Rv0253/nirD | |
| Fe_supp_jason_reseq | 0.338 | -0.273 |
| low_pH_jason_reseq | 0.989 | -0.395 |
| NO_jason_reseq | 0.244 | -0.454 |
| B6_jason_reseq | -0.967 | 0.088 |
| MHCII_jason_reseq | 0.829 | -1.208 |
| Isoniazid02 | -0.163 | 0.765 |
| Rifampicin4 | 0.753 | -1.17 |
| Ethambutol3 | -0.447 | 0.379 |
| Meropenem3 | -0.111 | -0.518 |
| Vancomycin16 | 0.231 | -0.31 |
| Rv2680_day32 | -2.334 | -2.689 |
| H37Rv_KO_MarP | 0.078 | 0.841 |
| hypoxia_3wks | -0.929 | -0.423 |
| hypoxia_6wks | -0.562 | -0.499 |
| glycerol | -0.325 | -1.047 |
| cholesterol | -1.093 | -0.923 |
| AJ | 0.741 | -0.464 |
| Bibs02 | -0.327 | 0.101 |
| Bibs02c | -0.196 | 0.0 |
| BL6 | 0.614 | 0.818 |
| BL6a | -0.319 | 0.023 |
| BXD01 | -0.143 | -0.141 |
| BXD010 | 0.437 | -0.187 |
| BXD011 | 0.018 | -1.012 |
| BXD03 | -0.366 | -1.493 |
| BXD04 | 0.81 | 0.477 |
| BXD05 | 0.473 | 0.408 |
| BXD06 | 0.366 | -0.178 |
| BXD07 | -1.088 | 0.061 |
| BXD08 | 0.702 | -0.11 |
| BXD09 | -0.408 | -0.986 |
| CAST | -0.215 | -0.874 |
| CCcont | -0.293 | 0.478 |
| DS01 | 0.929 | 0.614 |
| DS02 | -2.002 | 0.733 |
| DS04 | 0.167 | 0.654 |
| DS0c | -0.762 | -0.179 |
| GP01 | 0.708 | 1.84 |
| GP02 | -0.225 | -0.225 |
| GP0c | 0.59 | 0.957 |
| NOD | 2.394 | 4.048 |
| NZO | -0.428 | 1.256 |
| PWK | 0.516 | -0.419 |
| H37Rv_KO_CtpC | -0.025 | 0.907 |
| H37Rv_KO_CtpD | 1.294 | 0.384 |
| H37Rv_KO_Rv1272 | 0.197 | 0.138 |
| H37Rv_KO_SugABC | -1.594 | -0.763 |
| H37Rv_KO_MbtN | -1.109 | -0.747 |
| Trans05 | 0.487 | -0.474 |
| macrophage_unactivated | -0.922 | -1.875 |
| IL1 | 1.735 | -0.32 |
| Rapamycin | 1.163 | -1.292 |
| Tcell | -0.495 | -0.603 |
| GMCSF | -0.195 | -1.708 |
| IFNab | -0.707 | -0.327 |
| IFNg | -0.703 | -1.518 |
| IFNg_GMCSF1 | -1.106 | -0.223 |
| Rv1432_day32 | 3.125 | 0.883 |
| Rv1565c_day32 | 0.0 | -0.033 |
| secA2_input | 0.26 | -0.643 |
| delta_Rv3594 | -1.807 | -2.112 |
| delta_Rv3717 | -0.453 | -0.136 |
| delta_Rv3811 | -0.474 | -1.306 |
| delta_Rv0954 | -1.464 | -1.337 |
| PonA1 | -1.363 | -1.701 |
| EccD1_KO | 0.967 | -0.77 |
| EspI_KO | 0.838 | 0.573 |
| PE35_KO | -1.747 | -0.239 |
| PPE68_KO | -0.41 | -0.224 |
| glycerol2 | 0.496 | 0.483 |
| lignocerate | 1.313 | 0.949 |
| oleate | -0.829 | 0.308 |
| phosphatidylcholine | 0.819 | 0.648 |
| acetate | 1.792 | 0.906 |
| glucAc | 1.96 | 2.107 |
| Rv0950ko | 0.296 | 0.401 |
| Rv1096ko | 0.884 | 0.633 |
| Rv3684ko | -0.563 | 1.11 |
| delta_otsA_trehalose | -2.511 | 1.172 |