Top 10 genes with highest correlation to Rv3439c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2831/echA16 | (cc=0.5786) | info on Rv2831/echA16 |
| Rv0383c/- | (cc=0.5428) | info on Rv0383c/- |
| Rv1727/- | (cc=0.5389) | info on Rv1727/- |
| Rv1736c/narX | (cc=0.5366) | info on Rv1736c/narX |
| Rv1974/- | (cc=0.5308) | info on Rv1974/- |
| Rv2601/speE | (cc=0.5304) | info on Rv2601/speE |
| Rv0139/- | (cc=0.5296) | info on Rv0139/- |
| Rv1494/mazE4 | (cc=0.5242) | info on Rv1494/mazE4 |
| Rv2917/- | (cc=0.5219) | info on Rv2917/- |
| Rv0449c/- | (cc=0.5137) | info on Rv0449c/- |
Correlation of Rv3439c/- with Rv2601/speE
Normalized LFCs for Rv3439c/-:
(description and provenance of datasets)
| Rv3439c/- | Rv2601/speE | |
| Fe_supp_jason_reseq | -0.661 | -0.398 |
| low_pH_jason_reseq | -1.138 | -0.522 |
| NO_jason_reseq | -0.41 | 0.15 |
| B6_jason_reseq | 0.863 | 0.284 |
| MHCII_jason_reseq | 0.712 | 0.663 |
| Isoniazid02 | 0.49 | 0.384 |
| Rifampicin4 | 0.501 | 0.287 |
| Ethambutol3 | 0.216 | -0.243 |
| Meropenem3 | 0.944 | -0.472 |
| Vancomycin16 | 0.329 | 0.037 |
| Rv2680_day32 | -0.131 | 0.286 |
| H37Rv_KO_MarP | 0.008 | -0.097 |
| hypoxia_3wks | 0.064 | 0.163 |
| hypoxia_6wks | 0.416 | -0.633 |
| glycerol | 0.831 | 0.844 |
| cholesterol | -0.004 | 0.196 |
| AJ | 0.35 | 0.521 |
| Bibs02 | -0.852 | 0.139 |
| Bibs02c | 0.596 | 0.009 |
| BL6 | -0.167 | -1.057 |
| BL6a | -0.258 | -0.201 |
| BXD01 | -0.84 | -1.101 |
| BXD010 | -0.482 | -0.962 |
| BXD011 | -0.788 | -1.09 |
| BXD03 | -0.476 | -0.239 |
| BXD04 | -1.466 | -0.753 |
| BXD05 | -0.633 | -0.64 |
| BXD06 | -0.519 | -0.855 |
| BXD07 | -0.991 | -0.799 |
| BXD08 | -0.382 | -0.66 |
| BXD09 | -0.506 | -0.486 |
| CAST | -0.22 | 0.137 |
| CCcont | -0.209 | -1.219 |
| DS01 | 0.573 | 0.303 |
| DS02 | 0.443 | 0.449 |
| DS04 | -0.131 | 0.587 |
| DS0c | 0.234 | 0.057 |
| GP01 | 0.022 | 0.293 |
| GP02 | -0.036 | 0.33 |
| GP0c | -0.339 | -0.32 |
| NOD | -0.739 | 0.851 |
| NZO | 0.533 | -0.394 |
| PWK | 0.507 | 0.051 |
| H37Rv_KO_CtpC | -1.21 | -0.237 |
| H37Rv_KO_CtpD | 0.156 | 0.044 |
| H37Rv_KO_Rv1272 | -0.388 | -0.71 |
| H37Rv_KO_SugABC | -1.238 | 0.0 |
| H37Rv_KO_MbtN | -1.602 | -0.603 |
| Trans05 | -0.711 | -0.468 |
| macrophage_unactivated | -0.366 | 0.0 |
| IL1 | -0.184 | -0.311 |
| Rapamycin | 0.301 | -0.641 |
| Tcell | -0.831 | -0.955 |
| GMCSF | 0.584 | 0.409 |
| IFNab | -0.284 | -0.447 |
| IFNg | 0.04 | -0.235 |
| IFNg_GMCSF1 | -0.452 | 0.217 |
| Rv1432_day32 | 0.057 | -0.061 |
| Rv1565c_day32 | 0.464 | 0.608 |
| secA2_input | 0.299 | -0.131 |
| delta_Rv3594 | 1.716 | 0.408 |
| delta_Rv3717 | 1.287 | 0.424 |
| delta_Rv3811 | 1.184 | 0.192 |
| delta_Rv0954 | 2.106 | 0.907 |
| PonA1 | 1.384 | 0.793 |
| EccD1_KO | -0.141 | 0.082 |
| EspI_KO | -0.106 | 0.394 |
| PE35_KO | -0.403 | 0.073 |
| PPE68_KO | -0.765 | -0.4 |
| glycerol2 | 0.394 | -0.708 |
| lignocerate | 0.43 | -0.675 |
| oleate | -0.37 | -0.457 |
| phosphatidylcholine | 0.09 | -0.346 |
| acetate | -1.037 | -0.76 |
| glucAc | -0.233 | -0.898 |
| Rv0950ko | -0.112 | -0.332 |
| Rv1096ko | 0.365 | -0.416 |
| Rv3684ko | 0.039 | -0.989 |
| delta_otsA_trehalose | 0.507 | -0.097 |