Top 10 genes with highest correlation to Rv3439c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2831/echA16 | (cc=0.5786) | info on Rv2831/echA16 |
| Rv0383c/- | (cc=0.5428) | info on Rv0383c/- |
| Rv1727/- | (cc=0.5389) | info on Rv1727/- |
| Rv1736c/narX | (cc=0.5366) | info on Rv1736c/narX |
| Rv1974/- | (cc=0.5308) | info on Rv1974/- |
| Rv2601/speE | (cc=0.5304) | info on Rv2601/speE |
| Rv0139/- | (cc=0.5296) | info on Rv0139/- |
| Rv1494/mazE4 | (cc=0.5242) | info on Rv1494/mazE4 |
| Rv2917/- | (cc=0.5219) | info on Rv2917/- |
| Rv0449c/- | (cc=0.5137) | info on Rv0449c/- |
Correlation of Rv3439c/- with Rv1727/-
Normalized LFCs for Rv3439c/-:
(description and provenance of datasets)
| Rv3439c/- | Rv1727/- | |
| Fe_supp_jason_reseq | -0.661 | 0.027 |
| low_pH_jason_reseq | -1.138 | -0.718 |
| NO_jason_reseq | -0.41 | 0.299 |
| B6_jason_reseq | 0.863 | 1.146 |
| MHCII_jason_reseq | 0.712 | -0.728 |
| Isoniazid02 | 0.49 | 1.101 |
| Rifampicin4 | 0.501 | 0.945 |
| Ethambutol3 | 0.216 | 1.957 |
| Meropenem3 | 0.944 | 0.093 |
| Vancomycin16 | 0.329 | -0.122 |
| Rv2680_day32 | -0.131 | 0.681 |
| H37Rv_KO_MarP | 0.008 | -0.425 |
| hypoxia_3wks | 0.064 | -0.183 |
| hypoxia_6wks | 0.416 | -0.768 |
| glycerol | 0.831 | 0.607 |
| cholesterol | -0.004 | 1.003 |
| AJ | 0.35 | 0.082 |
| Bibs02 | -0.852 | -0.436 |
| Bibs02c | 0.596 | 0.285 |
| BL6 | -0.167 | -0.454 |
| BL6a | -0.258 | 0.27 |
| BXD01 | -0.84 | -0.679 |
| BXD010 | -0.482 | -1.64 |
| BXD011 | -0.788 | -0.903 |
| BXD03 | -0.476 | -0.66 |
| BXD04 | -1.466 | -0.928 |
| BXD05 | -0.633 | -0.021 |
| BXD06 | -0.519 | -1.357 |
| BXD07 | -0.991 | -0.758 |
| BXD08 | -0.382 | -0.38 |
| BXD09 | -0.506 | -0.344 |
| CAST | -0.22 | -0.704 |
| CCcont | -0.209 | -0.845 |
| DS01 | 0.573 | 0.245 |
| DS02 | 0.443 | -0.08 |
| DS04 | -0.131 | -0.327 |
| DS0c | 0.234 | -0.603 |
| GP01 | 0.022 | -1.319 |
| GP02 | -0.036 | 1.424 |
| GP0c | -0.339 | -0.603 |
| NOD | -0.739 | -0.9 |
| NZO | 0.533 | 0.091 |
| PWK | 0.507 | -0.909 |
| H37Rv_KO_CtpC | -1.21 | -1.309 |
| H37Rv_KO_CtpD | 0.156 | 0.914 |
| H37Rv_KO_Rv1272 | -0.388 | -0.461 |
| H37Rv_KO_SugABC | -1.238 | 0.238 |
| H37Rv_KO_MbtN | -1.602 | -0.529 |
| Trans05 | -0.711 | 0.292 |
| macrophage_unactivated | -0.366 | -0.925 |
| IL1 | -0.184 | -0.673 |
| Rapamycin | 0.301 | -0.055 |
| Tcell | -0.831 | 0.205 |
| GMCSF | 0.584 | 0.0 |
| IFNab | -0.284 | -0.952 |
| IFNg | 0.04 | -1.029 |
| IFNg_GMCSF1 | -0.452 | -1.1 |
| Rv1432_day32 | 0.057 | 0.0 |
| Rv1565c_day32 | 0.464 | 0.264 |
| secA2_input | 0.299 | -0.127 |
| delta_Rv3594 | 1.716 | 2.463 |
| delta_Rv3717 | 1.287 | 1.777 |
| delta_Rv3811 | 1.184 | 1.581 |
| delta_Rv0954 | 2.106 | 2.197 |
| PonA1 | 1.384 | 1.944 |
| EccD1_KO | -0.141 | 0.516 |
| EspI_KO | -0.106 | 0.682 |
| PE35_KO | -0.403 | 0.992 |
| PPE68_KO | -0.765 | 0.032 |
| glycerol2 | 0.394 | 0.552 |
| lignocerate | 0.43 | 0.591 |
| oleate | -0.37 | 0.797 |
| phosphatidylcholine | 0.09 | 1.008 |
| acetate | -1.037 | -0.318 |
| glucAc | -0.233 | 0.135 |
| Rv0950ko | -0.112 | -1.36 |
| Rv1096ko | 0.365 | -2.778 |
| Rv3684ko | 0.039 | -1.284 |
| delta_otsA_trehalose | 0.507 | 0.869 |