Top 10 genes with highest correlation to Rv3439c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2831/echA16 | (cc=0.5786) | info on Rv2831/echA16 |
| Rv0383c/- | (cc=0.5428) | info on Rv0383c/- |
| Rv1727/- | (cc=0.5389) | info on Rv1727/- |
| Rv1736c/narX | (cc=0.5366) | info on Rv1736c/narX |
| Rv1974/- | (cc=0.5308) | info on Rv1974/- |
| Rv2601/speE | (cc=0.5304) | info on Rv2601/speE |
| Rv0139/- | (cc=0.5296) | info on Rv0139/- |
| Rv1494/mazE4 | (cc=0.5242) | info on Rv1494/mazE4 |
| Rv2917/- | (cc=0.5219) | info on Rv2917/- |
| Rv0449c/- | (cc=0.5137) | info on Rv0449c/- |
Correlation of Rv3439c/- with Rv0139/-
Normalized LFCs for Rv3439c/-:
(description and provenance of datasets)
| Rv3439c/- | Rv0139/- | |
| Fe_supp_jason_reseq | -0.661 | -0.447 |
| low_pH_jason_reseq | -1.138 | 0.032 |
| NO_jason_reseq | -0.41 | 0.21 |
| B6_jason_reseq | 0.863 | 0.667 |
| MHCII_jason_reseq | 0.712 | 0.715 |
| Isoniazid02 | 0.49 | 0.045 |
| Rifampicin4 | 0.501 | -0.536 |
| Ethambutol3 | 0.216 | 2.085 |
| Meropenem3 | 0.944 | 0.017 |
| Vancomycin16 | 0.329 | -0.172 |
| Rv2680_day32 | -0.131 | 1.71 |
| H37Rv_KO_MarP | 0.008 | 0.186 |
| hypoxia_3wks | 0.064 | 0.048 |
| hypoxia_6wks | 0.416 | -0.111 |
| glycerol | 0.831 | 0.26 |
| cholesterol | -0.004 | 0.07 |
| AJ | 0.35 | 0.108 |
| Bibs02 | -0.852 | -0.195 |
| Bibs02c | 0.596 | 0.418 |
| BL6 | -0.167 | -0.668 |
| BL6a | -0.258 | -0.296 |
| BXD01 | -0.84 | -0.691 |
| BXD010 | -0.482 | -0.799 |
| BXD011 | -0.788 | -0.864 |
| BXD03 | -0.476 | -0.533 |
| BXD04 | -1.466 | -0.374 |
| BXD05 | -0.633 | -0.818 |
| BXD06 | -0.519 | -0.588 |
| BXD07 | -0.991 | -0.797 |
| BXD08 | -0.382 | -0.073 |
| BXD09 | -0.506 | -1.175 |
| CAST | -0.22 | 0.305 |
| CCcont | -0.209 | -1.12 |
| DS01 | 0.573 | -0.021 |
| DS02 | 0.443 | -0.348 |
| DS04 | -0.131 | 0.021 |
| DS0c | 0.234 | 0.528 |
| GP01 | 0.022 | 0.27 |
| GP02 | -0.036 | -0.118 |
| GP0c | -0.339 | -0.278 |
| NOD | -0.739 | -0.098 |
| NZO | 0.533 | 0.253 |
| PWK | 0.507 | 0.209 |
| H37Rv_KO_CtpC | -1.21 | -0.715 |
| H37Rv_KO_CtpD | 0.156 | 0.468 |
| H37Rv_KO_Rv1272 | -0.388 | -0.779 |
| H37Rv_KO_SugABC | -1.238 | -1.098 |
| H37Rv_KO_MbtN | -1.602 | -0.293 |
| Trans05 | -0.711 | -0.469 |
| macrophage_unactivated | -0.366 | -0.836 |
| IL1 | -0.184 | -0.581 |
| Rapamycin | 0.301 | -0.414 |
| Tcell | -0.831 | -0.74 |
| GMCSF | 0.584 | -0.158 |
| IFNab | -0.284 | -0.148 |
| IFNg | 0.04 | -0.16 |
| IFNg_GMCSF1 | -0.452 | -0.352 |
| Rv1432_day32 | 0.057 | -0.533 |
| Rv1565c_day32 | 0.464 | -0.058 |
| secA2_input | 0.299 | 0.125 |
| delta_Rv3594 | 1.716 | 0.517 |
| delta_Rv3717 | 1.287 | 0.487 |
| delta_Rv3811 | 1.184 | 0.333 |
| delta_Rv0954 | 2.106 | 0.689 |
| PonA1 | 1.384 | 0.085 |
| EccD1_KO | -0.141 | 0.451 |
| EspI_KO | -0.106 | -0.134 |
| PE35_KO | -0.403 | -0.545 |
| PPE68_KO | -0.765 | -0.275 |
| glycerol2 | 0.394 | 0.224 |
| lignocerate | 0.43 | -0.162 |
| oleate | -0.37 | 0.271 |
| phosphatidylcholine | 0.09 | -0.253 |
| acetate | -1.037 | -0.672 |
| glucAc | -0.233 | -0.609 |
| Rv0950ko | -0.112 | -0.072 |
| Rv1096ko | 0.365 | 0.0 |
| Rv3684ko | 0.039 | 0.282 |
| delta_otsA_trehalose | 0.507 | 0.065 |