Top 10 genes with highest correlation to Rv3439c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2831/echA16 | (cc=0.5786) | info on Rv2831/echA16 |
| Rv0383c/- | (cc=0.5428) | info on Rv0383c/- |
| Rv1727/- | (cc=0.5389) | info on Rv1727/- |
| Rv1736c/narX | (cc=0.5366) | info on Rv1736c/narX |
| Rv1974/- | (cc=0.5308) | info on Rv1974/- |
| Rv2601/speE | (cc=0.5304) | info on Rv2601/speE |
| Rv0139/- | (cc=0.5296) | info on Rv0139/- |
| Rv1494/mazE4 | (cc=0.5242) | info on Rv1494/mazE4 |
| Rv2917/- | (cc=0.5219) | info on Rv2917/- |
| Rv0449c/- | (cc=0.5137) | info on Rv0449c/- |
Correlation of Rv3439c/- with Rv2831/echA16
Normalized LFCs for Rv3439c/-:
(description and provenance of datasets)
| Rv3439c/- | Rv2831/echA16 | |
| Fe_supp_jason_reseq | -0.661 | -0.256 |
| low_pH_jason_reseq | -1.138 | 0.639 |
| NO_jason_reseq | -0.41 | -0.116 |
| B6_jason_reseq | 0.863 | 1.588 |
| MHCII_jason_reseq | 0.712 | 1.883 |
| Isoniazid02 | 0.49 | 2.51 |
| Rifampicin4 | 0.501 | 0.601 |
| Ethambutol3 | 0.216 | 2.881 |
| Meropenem3 | 0.944 | 0.048 |
| Vancomycin16 | 0.329 | 0.499 |
| Rv2680_day32 | -0.131 | -3.534 |
| H37Rv_KO_MarP | 0.008 | -0.086 |
| hypoxia_3wks | 0.064 | 0.861 |
| hypoxia_6wks | 0.416 | 0.489 |
| glycerol | 0.831 | 0.205 |
| cholesterol | -0.004 | 1.595 |
| AJ | 0.35 | 0.145 |
| Bibs02 | -0.852 | 0.54 |
| Bibs02c | 0.596 | -0.527 |
| BL6 | -0.167 | -1.548 |
| BL6a | -0.258 | -0.756 |
| BXD01 | -0.84 | -1.326 |
| BXD010 | -0.482 | -1.676 |
| BXD011 | -0.788 | 0.027 |
| BXD03 | -0.476 | -1.77 |
| BXD04 | -1.466 | -1.259 |
| BXD05 | -0.633 | -0.812 |
| BXD06 | -0.519 | -1.436 |
| BXD07 | -0.991 | -0.809 |
| BXD08 | -0.382 | -0.549 |
| BXD09 | -0.506 | -1.143 |
| CAST | -0.22 | -1.39 |
| CCcont | -0.209 | -1.479 |
| DS01 | 0.573 | 0.541 |
| DS02 | 0.443 | 0.859 |
| DS04 | -0.131 | 1.427 |
| DS0c | 0.234 | 0.046 |
| GP01 | 0.022 | 0.531 |
| GP02 | -0.036 | -1.576 |
| GP0c | -0.339 | -0.381 |
| NOD | -0.739 | -0.724 |
| NZO | 0.533 | -1.623 |
| PWK | 0.507 | 0.432 |
| H37Rv_KO_CtpC | -1.21 | -1.522 |
| H37Rv_KO_CtpD | 0.156 | 0.573 |
| H37Rv_KO_Rv1272 | -0.388 | -0.773 |
| H37Rv_KO_SugABC | -1.238 | -1.335 |
| H37Rv_KO_MbtN | -1.602 | -1.826 |
| Trans05 | -0.711 | -2.563 |
| macrophage_unactivated | -0.366 | -0.347 |
| IL1 | -0.184 | 1.385 |
| Rapamycin | 0.301 | 0.064 |
| Tcell | -0.831 | 0.821 |
| GMCSF | 0.584 | -0.055 |
| IFNab | -0.284 | 0.653 |
| IFNg | 0.04 | 0.673 |
| IFNg_GMCSF1 | -0.452 | 0.503 |
| Rv1432_day32 | 0.057 | -0.322 |
| Rv1565c_day32 | 0.464 | 0.924 |
| secA2_input | 0.299 | 0.0 |
| delta_Rv3594 | 1.716 | 1.825 |
| delta_Rv3717 | 1.287 | 1.538 |
| delta_Rv3811 | 1.184 | 2.066 |
| delta_Rv0954 | 2.106 | 2.374 |
| PonA1 | 1.384 | 3.382 |
| EccD1_KO | -0.141 | -1.184 |
| EspI_KO | -0.106 | -0.054 |
| PE35_KO | -0.403 | 0.055 |
| PPE68_KO | -0.765 | -1.389 |
| glycerol2 | 0.394 | -1.345 |
| lignocerate | 0.43 | -1.729 |
| oleate | -0.37 | -0.519 |
| phosphatidylcholine | 0.09 | -1.62 |
| acetate | -1.037 | -2.613 |
| glucAc | -0.233 | -1.71 |
| Rv0950ko | -0.112 | -1.152 |
| Rv1096ko | 0.365 | 0.232 |
| Rv3684ko | 0.039 | -0.848 |
| delta_otsA_trehalose | 0.507 | -0.106 |