TnSeqCorr

Top 10 genes with highest correlation to Rv3405c/-:

update plotcorrelationlink to info on gene
Rv0249c/- (cc=0.496) info on Rv0249c/-
Rv0248c/- (cc=0.4672) info on Rv0248c/-
Rv0886/fprB (cc=0.4652) info on Rv0886/fprB
Rv0840c/pip (cc=0.4585) info on Rv0840c/pip
Rv3641c/fic (cc=0.4573) info on Rv3641c/fic
Rv2613c/- (cc=0.454) info on Rv2613c/-
Rv1367c/- (cc=0.4534) info on Rv1367c/-
Rv0758/phoR (cc=0.4442) info on Rv0758/phoR
Rv1056/- (cc=0.4393) info on Rv1056/-
Rv2175c/- (cc=0.4367) info on Rv2175c/-

Correlation of Rv3405c/- with Rv2613c/-

Normalized LFCs for Rv3405c/-:
(description and provenance of datasets)
Rv3405c/-Rv2613c/-
Fe_supp_jason_reseq

0.497

0.268

low_pH_jason_reseq

-0.348

-1.884

NO_jason_reseq

-0.654

-2.956

B6_jason_reseq

-0.699

-1.402

MHCII_jason_reseq

1.019

-1.234

Isoniazid02

-0.528

-2.196

Rifampicin4

0.268

0.401

Ethambutol3

0.136

1.093

Meropenem3

0.403

-0.61

Vancomycin16

-0.117

0.0

Rv2680_day32

-0.947

-2.64

H37Rv_KO_MarP

1.319

2.047

hypoxia_3wks

-0.323

-3.102

hypoxia_6wks

-1.14

-2.637

glycerol

-0.527

-0.136

cholesterol

-0.852

-1.687

AJ

-0.716

-2.005

Bibs02

-1.281

-2.905

Bibs02c

0.285

-0.455

BL6

0.13

-2.084

BL6a

-0.099

-0.729

BXD01

-0.133

-2.527

BXD010

-0.276

-2.485

BXD011

-1.236

-1.765

BXD03

0.0

-2.623

BXD04

0.156

-2.399

BXD05

-1.578

-2.477

BXD06

-0.434

-2.457

BXD07

-0.361

-2.686

BXD08

-0.5

-2.58

BXD09

-1.018

-2.726

CAST

-0.674

-3.337

CCcont

0.0

-0.355

DS01

0.76

-3.273

DS02

0.718

-3.297

DS04

0.306

-2.572

DS0c

0.866

0.919

GP01

0.394

-1.915

GP02

-0.71

-1.614

GP0c

-0.3

-2.522

NOD

-1.627

-1.627

NZO

-0.52

-3.024

PWK

-0.807

-2.718

H37Rv_KO_CtpC

-0.424

-1.813

H37Rv_KO_CtpD

-0.254

-2.457

H37Rv_KO_Rv1272

-0.125

-2.736

H37Rv_KO_SugABC

0.996

-1.015

H37Rv_KO_MbtN

0.721

-1.803

Trans05

-0.15

-1.397

macrophage_unactivated

-0.117

0.537

IL1

-0.694

-2.011

Rapamycin

-0.654

-0.592

Tcell

-0.762

-0.629

GMCSF

-0.454

-0.792

IFNab

-0.399

-1.636

IFNg

-1.97

-1.812

IFNg_GMCSF1

-0.606

-0.943

Rv1432_day32

-0.188

0.0

Rv1565c_day32

2.303

2.003

secA2_input

0.581

-0.751

delta_Rv3594

-0.45

1.059

delta_Rv3717

-0.769

-0.668

delta_Rv3811

0.207

0.0

delta_Rv0954

-0.642

-0.398

PonA1

-1.003

-1.592

EccD1_KO

1.342

1.924

EspI_KO

1.497

0.419

PE35_KO

1.123

0.939

PPE68_KO

0.448

1.286

glycerol2

1.092

1.684

lignocerate

0.855

3.801

oleate

2.718

0.0

phosphatidylcholine

1.144

2.899

acetate

-0.073

4.337

glucAc

-0.378

3.342

Rv0950ko

-0.124

-1.013

Rv1096ko

-0.253

0.16

Rv3684ko

-1.336

0.891

delta_otsA_trehalose

-1.06

-1.204